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View Structure Prediction Details

Protein: CE01237
Organism: Caenorhabditis elegans
Length: 583 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01237.

Description E-value Query
Range
Subject
Range
CE29259 - status:Confirmed UniProt:Q95QM4 protein_id:AAL02479.1
954.0 [0..1] [583..1]

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Predicted Domain #1
Region A:
Residues: [1-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNDLPLLPP KNQHKHLDKT MISLPSDFRH LAHVGPMGSS EIENLRTSDN VIDTVNESSY  60
   61 YIRPSSSNST LRSQRKEKDR VGLDDAFPSA SKSEEEVEVV RGYENQPTSH QYINIAPPRP 120
  121 SKKNYKAPAP PTPPPQNSKP NLIFNAQDDE EETSEISEQP VVFRSISHTS NISTHIAPPP 180
  181 KIQTADRIVA PKPNSLVIER PGDLGGAFSF GLDDCIPIVK STPPLNTLSP LHRPLAI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [238-307]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKNQEETPIL SPASPPDDSN YMSTIRSTSV QGRKILDELD DWLDDLDDLD RDQLSTISTD  60
   61 ESGYPTLALE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [308-583]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KDRAFMKHLV EKYELGVAPE TIRLRKKKGP APKAPSLPPD LSSPTFQAPG FIPAFSARPV  60
   61 SMPPNRPPPS YEAPSFDAPE APGTVLINGR ALTKQNALDL RSSDESGVPP AIARFLYDKR 120
  121 IKSATMPMSI GRMTSSSGNT DVSTTSSRSN ADTVSSILST VGEDDDVEVL KRDREVEEEF 180
  181 VPPVPKPRSR KTVSTEPLKE EEEENVEEEI KGENVIGEEF QVVGDTKIND EQEDRVEATK 240
  241 DKINDAFIML PPPSAAAMIP SDSESEDDDN FIITRF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.27
Match: 1mo7A
Description: Sodium/potassium-transporting ATPase alpha-1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle