YRC Public Data Repository - Protein Structure Prediction

Protein:	CE01088
Organism:	Caenorhabditis elegans
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01088.

Description	E-value	Query Range	Subject Range
gi\|157750692 - gi\|157750692\|ref\|XP_001679058.1\| Hypothetical protein CBG03307 [Caenorhabditis briggsae AF16] gi\|187036715, gi... - gi\|39597605\|emb\|CAE59835.1\| Hypothetical protein CBG03307 [Caenorhabditis briggsae], gi\|187036715\|em...	165.0	[0..1]	[99..1]
gi\|115734391, gi... - gi\|115901072\|ref\|XP_787621.2\| PREDICTED: similar to conserved hypothetical protein, partial [Strongy...	45.0	[0..6]	[84..5]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDRHMSSIF PECDHLKQIY DKCFTEFFQK FITPNYRHQY AVNPCERLHD VYKRCVEERL  60
   61 ATQRPFEIDL DEIRKEYLNT DDDKLKDRQN NQKTNSENKC SSS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	1ezvH
Description:	Nonheme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits