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View Structure Prediction Details

Protein: mdt-10
Organism: Caenorhabditis elegans
Length: 173 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdt-10.

Description E-value Query
Range
Subject
Range
gi|50736031 - gi|50736031|ref|XP_419024.1| PREDICTED: similar to DNA segment, Chr 13, Wayne State University 50, e...
193.0 [0..42] [169..76]
gi|74224290 - gi|74224290|dbj|BAE33733.1| unnamed protein product [Mus musculus]
181.0 [0..42] [168..3]
ENSCJAT00000016867 - null
MED10_PONPY - Mediator of RNA polymerase II transcription subunit 10 - Pongo pygmaeus (Orangutan)
MED10 - mediator complex subunit 10
gi|114598920 - gi|114598920|ref|XP_001143506.1| PREDICTED: mediator of RNA polymerase II transcription, subunit 10 ...
MED10_PONAB - Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1
MED10_BOVIN - Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1
180.0 [0..42] [169..3]
MED10_XENTR - Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1
180.0 [0..42] [169..3]
MED10_XENLA - Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1
179.0 [0..42] [169..3]
CCDS34134.1_1 - null
gi|109076692 - gi|109076692|ref|XP_001082923.1| PREDICTED: similar to Mediator complex subunit 10 CG5057-PA [Macaca...
179.0 [0..42] [169..3]
MED10_MACFA - Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1
179.0 [0..42] [169..3]
MED10_CAEBR - Mediator of RNA polymerase II transcription subunit 10 OS=Caenorhabditis briggsae GN=mdt-10 PE=3 SV=...
gi|157750690 - gi|157750690|ref|XP_001679057.1| Hypothetical protein CBG03308 [Caenorhabditis briggsae AF16]
178.0 [0..4] [168..13]
MED10_DANRE - Mediator of RNA polymerase II transcription subunit 10 OS=Danio rerio GN=med10 PE=2 SV=1
175.0 [0..42] [169..3]

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Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQQQQQSQQ RMMELHERND REKLARKTEK EREEERRKQE DDKILQLEKK LEEFQENARF  60
   61 IGDLASNFQT KYQDALNGRI YTLVRGLQDL DRMKGTFSDK KVPLDLLPYL DDGKNPCLYS 120
  121 KHCMEKTLEK NKAVNGKIEI YKKFRAHLMK EFSEEMPDLV MYYRSIREDL DLS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle