YRC Public Data Repository - Protein Structure Prediction

Protein:	mdt-10
Organism:	Caenorhabditis elegans
Length:	173 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mdt-10.

Description	E-value	Query Range	Subject Range
gi\|50736031 - gi\|50736031\|ref\|XP_419024.1\| PREDICTED: similar to DNA segment, Chr 13, Wayne State University 50, e...	193.0	[0..42]	[169..76]
gi\|74224290 - gi\|74224290\|dbj\|BAE33733.1\| unnamed protein product [Mus musculus]	181.0	[0..42]	[168..3]
ENSCJAT00000016867 - null MED10_PONPY - Mediator of RNA polymerase II transcription subunit 10 - Pongo pygmaeus (Orangutan) MED10 - mediator complex subunit 10 gi\|114598920 - gi\|114598920\|ref\|XP_001143506.1\| PREDICTED: mediator of RNA polymerase II transcription, subunit 10 ... MED10_PONAB - Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1 MED10_BOVIN - Mediator of RNA polymerase II transcription subunit 10 OS=Bos taurus GN=MED10 PE=2 SV=1	180.0	[0..42]	[169..3]
MED10_XENTR - Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1	180.0	[0..42]	[169..3]
MED10_XENLA - Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1	179.0	[0..42]	[169..3]
CCDS34134.1_1 - null gi\|109076692 - gi\|109076692\|ref\|XP_001082923.1\| PREDICTED: similar to Mediator complex subunit 10 CG5057-PA [Macaca...	179.0	[0..42]	[169..3]
MED10_MACFA - Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1	179.0	[0..42]	[169..3]
MED10_CAEBR - Mediator of RNA polymerase II transcription subunit 10 OS=Caenorhabditis briggsae GN=mdt-10 PE=3 SV=... gi\|157750690 - gi\|157750690\|ref\|XP_001679057.1\| Hypothetical protein CBG03308 [Caenorhabditis briggsae AF16]	178.0	[0..4]	[168..13]
MED10_DANRE - Mediator of RNA polymerase II transcription subunit 10 OS=Danio rerio GN=med10 PE=2 SV=1	175.0	[0..42]	[169..3]

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Predicted Domain #1

Region A:
Residues: [1-173]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQQQQQSQQ RMMELHERND REKLARKTEK EREEERRKQE DDKILQLEKK LEEFQENARF  60
   61 IGDLASNFQT KYQDALNGRI YTLVRGLQDL DRMKGTFSDK KVPLDLLPYL DDGKNPCLYS 120
  121 KHCMEKTLEK NKAVNGKIEI YKKFRAHLMK EFSEEMPDLV MYYRSIREDL DLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits