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View Structure Prediction Details

Protein: CE01062
Organism: Caenorhabditis elegans
Length: 418 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE01062.

Description E-value Query
Range
Subject
Range
gi|157776137 - gi|157776137|ref|XP_001666134.1| hypothetical protein CBG20195 [Caenorhabditis briggsae AF16]
gi|187023598, gi... - gi|39581920|emb|CAE72882.1| Hypothetical protein CBG20195 [Caenorhabditis briggsae], gi|187023598|em...
546.0 [0..1] [418..1]

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Predicted Domain #1
Region A:
Residues: [1-241]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKFNSDEQ WYISPLLNLA TVKEEMLEVR ELGEVIIDRT MDDFDSKTEK EHEMEMWKNS  60
   61 LSYIQGVTEE ESLEAIEEVS NLDMFLEGSS DVQTRRFEDM KGDRKFLERS PLVSHKHVIS 120
  121 REKTMKTSRQ RKSAYVTSLK YDKYMLNAGA NTSLFHPQCS ILEKCEDDIV LIVDALMPYN 180
  181 RELLSSELRS SRLLKPMTKF LVRGDTLLSD LRQKFVCQSD TIVPLENGLE LDPPNLDNAT 240
  241 A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [242-418]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VRFPSSFIFV HDTFYVDMPP NAIDISHPIR NFMLHREIYD PVEACSMEGV RIIDLKLRLG  60
   61 QPYIFQHSGN CEHLLVFHDL RLLHESDPWG IDKYPFTLYE KGNEKKCDIC KKGHVEFVVE 120
  121 RHELLPNTYT HFCRTCFQEF NYVHGVKTHS FIAWPYTELQ TGEQRGWPFG DFEQEDD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle