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View Structure Prediction Details

Protein: egg-3
Organism: Caenorhabditis elegans
Length: 555 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for egg-3.

Description E-value Query
Range
Subject
Range
gi|109123034 - gi|109123034|ref|XP_001083499.1| PREDICTED: similar to protein tyrosine phosphatase, receptor type, ...
438.0 [0..24] [519..1486]

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Predicted Domain #1
Region A:
Residues: [1-555]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTSDSHLPL SNLARSDSIE FKDAVINEKW VHSANRRKGH LTPKAPEKKS GWFGGQKSEE  60
   61 ELLMERVEQH ELEELQTFIA QKLFRVDGII CDEETRILLV EKLMNAKEYP TINHDELAHR 120
  121 YGSSMAGWLR DRLVPSMSDC SSVLQRAAAE FYQNKMSDPL CNWGQLNPEH VSMVAARIAK 180
  181 FSEEMSSKVK WSLLVEPGKF SCHLTEFVQE FNRLDRMFVS NELSDEESLQ TAFNANYLTK 240
  241 ARSKMVPCAE FSRVKLNDGL GRLDDRNELR NGMFSDEHEF LQEEGYTAKS TYGTTDFIHA 300
  301 NYVKGGPLLN TFICAQAPLK NTQEDFWRMV FQEKCQFIVM LNSAVDSSTL GPLDSANRNH 360
  361 CPYYWPRAEN ESLRFGSFHI TCMKVDSKAD PLFTITKLKV QKVGGNLLDA EFDEELFLEH 420
  421 WQWDWQYLGD VHWPFRVLRK ARQLSTPTIV QCIDGCSKSG TLVSIETALM HFIRGSPITK 480
  481 SLILQSCVFV RLQRRLSVSS VLLYLFIYRV ILRWIEPYVN KWYHRAALGL RFKSIGFIQK 540
  541 YNAMIQEFSR ITPAY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle