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View Structure Prediction Details

Protein: sip-1
Organism: Caenorhabditis elegans
Length: 159 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sip-1.

Description E-value Query
Range
Subject
Range
gi|187025370, gi... - gi|39591876|emb|CAE71454.1| Hypothetical protein CBG18371 [Caenorhabditis briggsae], gi|187025370|em...
gi|157775785 - gi|157775785|ref|XP_001665958.1| hypothetical protein CBG18371 [Caenorhabditis briggsae AF16]
131.0 [0..3] [152..2]
CRYAA - crystallin, alpha A
gi|114684552 - gi|114684552|ref|XP_514927.2| PREDICTED: crystallin, alpha A [Pan troglodytes]
123.0 [0..2] [152..12]
CRYAA_MELUS - Alpha-crystallin A chain OS=Melursus ursinus GN=CRYAA PE=1 SV=1
123.0 [0..2] [152..12]
CRYAA_MANJA - Alpha-crystallin A chain OS=Manis javanica GN=CRYAA PE=1 SV=1
123.0 [0..2] [152..12]
CRYAA_PTEPO - Alpha-crystallin A chain OS=Pteropus poliocephalus GN=CRYAA PE=1 SV=1
122.0 [0..2] [152..12]
CRYAA_HIPAM - Alpha-crystallin A chain OS=Hippopotamus amphibius GN=CRYAA PE=1 SV=1
CRYAA_GIRCA - Alpha-crystallin A chain OS=Giraffa camelopardalis GN=CRYAA PE=1 SV=1
122.0 [0..2] [152..12]
CRYAA_BALAC - Alpha-crystallin A chain OS=Balaenoptera acutorostrata GN=CRYAA PE=1 SV=1
122.0 [0..2] [152..12]
CRYAA_PEDCA - Alpha-crystallin A chain OS=Pedetes capensis GN=CRYAA PE=1 SV=1
CRYAA_CAVPO - Alpha-crystallin A chain OS=Cavia porcellus GN=CRYAA PE=1 SV=1
122.0 [0..2] [152..12]
CRYAA_TAPIN - Alpha-crystallin A chain OS=Tapirus indicus GN=CRYAA PE=1 SV=1
122.0 [0..2] [152..12]
CRYAA_CAMDR - Alpha-crystallin A chain OS=Camelus dromedarius GN=CRYAA PE=1 SV=1
122.0 [0..2] [152..12]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLCPYTGR PTGLFRDFED MMPYWAQRHS MLNNFNNIVP QQLNEVENTA QKFCVKLDVA  60
   61 AFKPEELKVN LEGHVLTIEG HHEVKTEHGF SKRSFTRQFT LPKDVDLAHI HTVINKEGQM 120
  121 TIDAPKTGSN TTVRALPIHT SAGHAVTQKP SSTTTTGKH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 1gmeA
Description: Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.5466198129438 bayes_pls_golite062009
protein binding 0.743263427072441 bayes_pls_golite062009
unfolded protein binding 0.540503020005284 bayes_pls_golite062009
catalytic activity 0.260308151913118 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle