YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00937
Organism:	Caenorhabditis elegans
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00937.

Description	E-value	Query Range	Subject Range
gi\|187952795, gi... - gi\|31542053\|ref\|NP_663461.2\| membrane-associated ring finger (C3HC4) 2 [Mus musculus], gi\|26333467\|d...	135.0	[0..7]	[180..46]
gi\|16358983 - gi\|16358983\|gb\|AAH15910.1\| MARCH2 protein [Homo sapiens]	134.0	[0..7]	[180..39]
gi\|28919721, gi\|... - gi\|32414645\|ref\|XP_327802.1\| hypothetical protein [Neurospora crassa], gi\|28919721\|gb\|EAA29128.1\| co... gi\|85090329 - gi\|85090329\|ref\|XP_958364.1\| hypothetical protein NCU07516 [Neurospora crassa OR74A]	132.0	[0..9]	[180..50]
MARH2_RAT - E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1	131.0	[0..7]	[180..46]
gi\|15809927, gi\|... - gi\|66865928\|gb\|AAY57598.1\| RING finger family protein [Arabidopsis thaliana], gi\|21360565\|gb\|AAM4747...	127.0	[0..3]	[177..244]
MARH2_DANRE - E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2 SV=1	127.0	[0..7]	[179..46]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTIIERNLE TIRSPKEVST KTVICRICFD NDTSSDSLIK PCSCSGTVAY VHNGCLEQWV  60
   61 RTTSNIQCTI CQDMFELIPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.0
Match:	2d8sA
Description:	No description for 2d8sA was found.

Predicted Domain #2

Region A:
Residues: [81-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLKDWNKITL PRPLSEQLED YMEFGCTLAW VVYMLRFAYV GLRYGSRSMI ENVDMAIGTG  60
   61 MMRSFWWMTF WFNFLYYGAM CFVFFEKWLI DNTIFKFKDR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits