YRC Public Data Repository - Protein Structure Prediction

Protein:	eif-3.F
Organism:	Caenorhabditis elegans
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for eif-3.F.

Description	E-value	Query Range	Subject Range
gi\|114636591 - gi\|114636591\|ref\|XP_508270.2\| PREDICTED: hypothetical protein LOC451007 [Pan troglodytes]	278.0	[0..7]	[293..111]
gi\|62641108, gi\|... - gi\|62641108\|ref\|XP_215037.3\| PREDICTED: similar to eukaryotic translation initiation factor 3, subun...	273.0	[0..7]	[293..96]
gi\|21754858 - gi\|21754858\|dbj\|BAC04577.1\| unnamed protein product [Homo sapiens]	272.0	[0..7]	[293..85]
gi\|61369601, gi\|... - gi\|61369601\|gb\|AAX43358.1\| eukaryotic translation initiation factor 3 subunit 5 epsilon [synthetic c...	272.0	[0..7]	[293..92]
gi\|109107398 - gi\|109107398\|ref\|XP_001105893.1\| PREDICTED: similar to eukaryotic translation initiation factor 3, s... EIF3F_MACFA - Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1	271.0	[0..7]	[293..96]
gi\|61816288 - gi\|61816288\|ref\|XP_591540.1\| PREDICTED: similar to translation initiation factor 3 47 kDa subunit is...	269.0	[0..7]	[293..104]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNLTVNVH PGVYMNVVDT HMRRTKSSAK NTGQEKCMGT LMGYYEKGSI QVTNCFAIPF  60
   61 NESNDDLEID DQFNQQMISA LKKTSPNEQP VGWFLTTSDI TSSCLIYHDY YVRVITEASA 120
  121 RRESPPIVVL TIDTTFSGDM SKRMPVRAYL RSKAGIPGAA GPHCAIFNPL RVELAAFPGE 180
  181 LVAMQLIEKA LDSRRREATL ESGLEQLETS TAQMIEWLER MLHYVEDVNK N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	2o95A
Description:	No description for 2o95A was found.

Predicted Domain #2

Region A:
Residues: [232-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GEKPGDAQIG RQLMDIVTAS SNNMQPEKLD TLVKNTLRDY VMVSYLAKLT QTQLQVHERL  60
   61 VSA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits