YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00931
Organism:	Caenorhabditis elegans
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00931.

Description	E-value	Query Range	Subject Range
gi\|187023568, gi... - gi\|39580633\|emb\|CAE72909.1\| Hypothetical protein CBG20227 [Caenorhabditis briggsae], gi\|187023568\|em... gi\|157749169 - gi\|157749169\|ref\|XP_001678298.1\| Hypothetical protein CBG20227 [Caenorhabditis briggsae AF16]	230.0	[0..1]	[234..1]
gi\|57918726 - gi\|57918726\|gb\|AAW59441.1\| WW domain binding protein 2 [Macaca fascicularis]	201.0	[0..11]	[131..1]
WBP2_RAT - WW domain-binding protein 2 OS=Rattus norvegicus GN=Wbp2 PE=1 SV=1	201.0	[0..1]	[157..1]
WBP2_MOUSE - WW domain-binding protein 2 OS=Mus musculus GN=Wbp2 PE=1 SV=1	201.0	[0..1]	[157..1]
gi\|4205086 - gi\|4205086\|gb\|AAD10951.1\| WW domain binding protein-2 [Homo sapiens]	197.0	[0..1]	[157..8]
gi\|109118285 - gi\|109118285\|ref\|XP_001100942.1\| PREDICTED: similar to WW domain binding protein 2 isoform 3 [Macaca... gi\|90077220, gi\|... - gi\|90077220\|dbj\|BAE88290.1\| unnamed protein product [Macaca fascicularis], gi\|90075248\|dbj\|BAE87304....	196.0	[0..1]	[157..1]
gi\|73964868 - gi\|73964868\|ref\|XP_849363.1\| PREDICTED: similar to WW domain binding protein 2 isoform 2 [Canis fami...	195.0	[0..1]	[157..1]
gi\|76645742 - gi\|76645742\|ref\|XP_583611.2\| PREDICTED: similar to WW domain binding protein 2 isoform 1 [Bos taurus...	195.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSINTANTPD GLGVLLYNGE TIVIFAQGVV MTLGTSENEN LEGRRTGTIY LTSHRIIFMP  60
   61 DPGDWLKSFE IPFNSMQDVN LNQPIFGANY LCGIASAVQG GQMRGEVKWR MTFNRGGCIE 120
  121 FGQSLLQAVE RAVRMRPENA PPAYSPPIGD FYSAPPAYYQ PSPD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.79
Match:	2cayA
Description:	No description for 2cayA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.62435225923382	bayes_pls_golite062009
protein binding	1.13932627569065	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [165-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGPNGFNPTT DSFPDQPNPS RVFMSSAPPP YPGIGPERGP HPTEELHVAG QFEAPPAYGS  60
   61 GETADGLRRR N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: