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View Structure Prediction Details

Protein: tag-125
Organism: Caenorhabditis elegans
Length: 376 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-125.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
477.0 [0..1] [375..1366]

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Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTSENAASA AEQQPTQQID QLTVPNAPDG GSSAPAPSTS PNSISPSNPT GTPAPGASAQ  60
   61 T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.12
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [62-376]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNPNAAGASA SGSANYKLMC TLEGHTKSIS SAKFSPCGKY LGTSSADKTV KIWNMDHMIC  60
   61 ERTLTGHKLG VNDIAWSSDS RCVVSASDDK TLKIFEIVTS RMTKTLKGHN NYVFCCNFNP 120
  121 QSSLVVSGSF DESVRIWDVK TGMCIKTLPA HSDPVSAVSF NRDGSLIASG SYDGLVRIWD 180
  181 TANGQCIKTL VDDENPPVAF VKFSPNGKYI LASNLDSTLK LWDFSKGKTL KQYTGHENSK 240
  241 YCIFANFSVT GGKWIISGSE DCKIYIWNLQ TREIVQCLEG HTQPVLASDC HPVQNIIASG 300
  301 ALEPDNKIHI WRSDV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.0
Match: 2gnqA
Description: No description for 2gnqA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle