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View Structure Prediction Details

Protein: CE00893
Organism: Caenorhabditis elegans
Length: 99 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00893.

Description E-value Query
Range
Subject
Range
gi|39596168, gi|... - gi|39596168|emb|CAE69805.1| Hypothetical protein CBG16115 [Caenorhabditis briggsae], gi|187026696|em...
gi|157767500 - gi|157767500|ref|XP_001667230.1| Hypothetical protein CBG16115 [Caenorhabditis briggsae AF16]
127.0 [0..9] [98..7]
CE05649 - status:Confirmed UniProt:Q19513 protein_id:CAA96624.1
115.0 [0..10] [98..1]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISFIKATIL VGLVAFLACQ NSQVGAASSL MPNVCNAGEE TAMPCVCCKK ACWFGIAEMT  60
   61 TAYFGHMPGE RSDAEAKFTL AMMNQCFKLE CNETCATAH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.768 a.4.9 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
View Download 0.743 f.17.1 F1F0 ATP synthase subunit C
View Download 0.613 d.43.1 Elongation factor Ts (EF-Ts), dimerisation domain
View Download 0.582 a.4.5 "Winged helix" DNA-binding domain
View Download 0.543 a.3.1 Cytochrome c


YRC Informatics Platform - Version 3.0
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