YRC Public Data Repository - Protein Structure Prediction

Protein:	clec-158
Organism:	Caenorhabditis elegans
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clec-158.

Description	E-value	Query Range	Subject Range
gi\|157774781 - gi\|157774781\|ref\|XP_001665456.1\| hypothetical protein CBG16543 [Caenorhabditis briggsae AF16] gi\|187026347, gi... - gi\|39593989\|emb\|CAE70099.1\| Hypothetical protein CBG16543 [Caenorhabditis briggsae], gi\|187026347\|em...	159.0	[0..1]	[210..1]
clec-159 - status:Predicted UniProt:Q21985 protein_id:AAC47042.2	145.0	[0..1]	[210..1]
gi\|4878035, gi\|4... - gi\|4878035\|gb\|AAD24546.2\| neurocan core protein precursor [Gallus gallus], gi\|45382043\|ref\|NP_990071...	136.0	[0..5]	[209..1036]
gi\|57047785 - gi\|57047785\|ref\|XP_536187.1\| PREDICTED: similar to Aggrecan core protein precursor (Cartilage-specif...	134.0	[0..5]	[208..2102]
gi\|37953324 - gi\|37953324\|gb\|AAP44494.1\| aggrecan [Bos taurus]	134.0	[0..5]	[208..2135]
gi\|114599323 - gi\|114599323\|ref\|XP_001147604.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]	134.0	[0..7]	[208..1815]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKFILSAFV VALVAADCAL KCPDGYFSFK RAPSAKNSMT GLWCVKAILS DTLISPNQAK  60
   61 QVCEKDGSIL TSFENLDERT KLATVLRDFL SAKKLDRGGM IVDGHRLKNC ETDDRTVLNA 120
  121 EPCRNSSTGF TTDEKHTDNT FMWKSWADTE PGQSIFEKQI ESCLQLAISQ FKSRTELIND 180
  181 VFCNYVKHPQ NEGAYDLWNY GAVCGRLPEW N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.522879
Match:	1sl6A
Description:	Crystal Structure of a fragment of DC-SIGNR (containg the carbohydrate recognition domain and two repeats of the neck) complexed with Lewis-x.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits