YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00787
Organism:	Caenorhabditis elegans
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00787.

Description	E-value	Query Range	Subject Range
gi\|50414924, gi\|... - gi\|50414924\|gb\|AAH77832.1\| Unknown (protein for MGC:80511) [Xenopus laevis], gi\|215539482\|gb\|AAI7003...	152.0	[0..3]	[120..43]
gi\|26347857 - gi\|26347857\|dbj\|BAC37577.1\| unnamed protein product [Mus musculus]	152.0	[0..1]	[120..39]
gi\|38156576, gi\|... - gi\|38156576\|gb\|AAR12910.1\| nuclear transcription factor-Y B subunit 3 [Bufo gargarizans], gi\|3815657...	151.0	[0..3]	[120..43]
gi\|114646579 - gi\|114646579\|ref\|XP_509327.2\| PREDICTED: similar to Nuclear transcription factor Y, beta [Pan troglo...	151.0	[0..1]	[120..31]
NFYB_CHICK - Nuclear transcription factor Y subunit beta OS=Gallus gallus GN=NFYB PE=2 SV=2	151.0	[0..1]	[120..37]
NFYB_BOVIN - Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB PE=2 SV=1	151.0	[0..1]	[125..39]
gi\|60653441 - gi\|60653441\|gb\|AAX29415.1\| nuclear transcription factor Y beta [synthetic construct]	150.0	[0..1]	[120..39]
gi\|105492, gi\|35050 - gi\|35050\|emb\|CAA42230.1\| CAAT-box DNA binding protein subunit B (NF-YB) [Homo sapiens], gi\|105492\|pi... gi\|109098520, gi... - gi\|109098520\|ref\|XP_001097495.1\| PREDICTED: similar to Nuclear transcription factor Y subunit beta (...	150.0	[0..1]	[120..37]
ENSMMUT000000317... - null, null NFYB - nuclear transcription factor Y, beta ENSCJAT00000028469 - null gi\|123993257, gi... - gi\|60656481\|gb\|AAX32804.1\| nuclear transcription factor Y beta [synthetic construct], gi\|208966894\|d...	150.0	[0..1]	[120..39]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNDVDQND DRIAQMMMPA AIVTRLMKED NISASKDARD VIARAAAVFL INLSDVSAQS  60
   61 ARDQKHKTIS GDDVVKGLRE LENTSIHNHC KSANDKWKVI SQQKALARKN PVESSSVNAE 120
  121 MDDDIIDDTP VDDSLMN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.39794
Match:	1n1jA
Description:	Nuclear transcription factor Y subunit beta (Nf-Yb3)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.49871374119327	bayes_pls_golite062009
DNA binding	0.645109998309164	bayes_pls_golite062009
protein binding	0.383186448082478	bayes_pls_golite062009
nucleic acid binding	0.158038145927997	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: