YRC Public Data Repository - Protein Structure Prediction

Protein:	mtss-1
Organism:	Caenorhabditis elegans
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mtss-1.

Description	E-value	Query Range	Subject Range
gi\|157776037 - gi\|157776037\|ref\|XP_001666084.1\| hypothetical protein CBG06914 [Caenorhabditis briggsae AF16] gi\|39585099, gi\|... - gi\|39585099\|emb\|CAE62750.1\| Hypothetical protein CBG06914 [Caenorhabditis briggsae], gi\|187033849\|em...	176.0	[0..1]	[170..1]
SSB_SHEHA - Single-stranded DNA-binding protein OS=Shewanella hanedai GN=ssb PE=3 SV=1	171.0	[0..49]	[162..1]
SO4028 - single-strand binding protein SSB_SHEON - Single-stranded DNA-binding protein OS=Shewanella oneidensis (strain MR-1) GN=ssb PE=3 SV=1	170.0	[0..49]	[167..1]
gi\|82741712, gi\|... - gi\|82741712\|ref\|ZP_00904427.1\| Single-strand binding protein [Shewanella sp. W3-18-1], gi\|82720946\|g... gi\|124545570, gi... - gi\|124545570\|ref\|ZP_01704763.1\| single-strand binding protein [Shewanella putrefaciens 200], gi\|1245...	170.0	[0..49]	[169..1]
gi\|145563435, gi... - gi\|77813225\|ref\|ZP_00812503.1\| Single-strand binding protein [Shewanella putrefaciens CN-32], gi\|778...	170.0	[0..49]	[169..1]
gi\|1490781 - gi\|1490781\|gb\|AAB57885.1\| single stranded DNA-binding protein [Shewanella sp. PT99]	170.0	[0..49]	[169..1]
gi\|127511469, gi... - gi\|78367116\|ref\|ZP_00837390.1\| Single-strand binding protein [Shewanella sp. PV-4], gi\|78360889\|gb\|E...	169.0	[0..49]	[162..1]
gi\|113947219, gi... - gi\|160873703\|ref\|YP_001553019.1\| single-strand binding protein [Shewanella baltica OS195], gi\|160859... gi\|151363724, gi... - gi\|152999106\|ref\|YP_001364787.1\| single-strand binding protein [Shewanella baltica OS185], gi\|151363... gi\|68521677, gi\|... - gi\|68540458\|ref\|ZP_00580209.1\| Single-strand binding protein [Shewanella baltica OS155], gi\|68521677...	169.0	[0..49]	[169..1]
gi\|91794661, gi\|... - gi\|91794661\|ref\|YP_564312.1\| single-strand binding protein [Shewanella denitrificans OS217], gi\|9171...	167.0	[0..49]	[169..1]
gi\|167964627, gi... - gi\|170729834\|ref\|YP_001775267.1\| single-stranded DNA binding protein [Xylella fastidiosa M12], gi\|16... gi\|71164635, gi\|... - gi\|71274903\|ref\|ZP_00651191.1\| Single-strand binding protein [Xylella fastidiosa Dixon], gi\|71164635... gi\|71731377, gi\|... - gi\|71898791\|ref\|ZP_00680959.1\| Single-strand binding protein [Xylella fastidiosa Ann-1], gi\|71731377...	166.0	[0..40]	[167..15]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRSLSTISK STVRCMSLTS KMAAEQPSKQ EVDDLFAEKP QHHNPEQRRH AYSVNKVELV  60
   61 GGVALDPLYK TGRNGKPYLI FNIITNSYFK QQDGTTLDQT ERHAVSVFGK QAEILSKTIK 120
  121 KGSRLMVQGR LHYSGGQKDE QGNRTQRNTY IIAQTVQPLA RAARENPDQH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.0
Match:	1eqqA
Description:	SINGLE STRANDED DNA BINDING PROTEIN AND SSDNA COMPLEX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.141433535514844	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: