YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00747
Organism:	Caenorhabditis elegans
Length:	276 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00747.

Description	E-value	Query Range	Subject Range
gi\|113611436, gi... - gi\|50938141\|ref\|XP_478598.1\| putative serine/threonine-specific protein kinase [Oryza sativa (japoni...	289.0	[0..1]	[267..359]
gi\|7269165, gi\|7... - pir\|\|T04835 probable serine/threonine-specific protein kinase (EC 2.7.1.-) F21P8.70 - Arabidopsis th...	288.0	[0..3]	[272..318]
gi\|90399084 - gi\|90399084\|emb\|CAJ86025.1\| B0808H03.2 [Oryza sativa (indica cultivar-group)]	285.0	[0..2]	[274..3092]

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Predicted Domain #1

Region A:
Residues: [1-276]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLGEGAFGQ VFKGILRGPN GQVIPVAVKQ LKANAIDEER EEFVREIQMM QTVGQHDNIV  60
   61 TMYGYCMDEQ LQCMIMEYVP YGDLKHYLQN MRKEKDSDSA IDSKEFLSFT NQIACGMAHL 120
  121 ESVGIIHRDL AARNILVGTG KVLKISDFGM SRPGVYIKMS KGVIPLRWLS PEAIKDNTYS 180
  181 NKSDVWAFGV LLWEIATLGG FPYNNVADKD ILNQLTEGMR LEQPAKCSDD MYILMKSCWN 240
  241 LKAEDRPSFL AILSKIEQIA NVDADAPPSD PPAKDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.045757
Match:	2qobA
Description:	No description for 2qobA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits