YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00608
Organism:	Caenorhabditis elegans
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00608.

Description	E-value	Query Range	Subject Range
KLHDB_DROYA - Kelch-like protein diablo OS=Drosophila yakuba GN=dbo PE=3 SV=1 KLHDB_DROSE - Kelch-like protein diablo OS=Drosophila sechellia GN=dbo PE=3 SV=1 dbo-PA - The gene diablo is referred to in FlyBase by the symbol Dmel\dbo (CG6224, FBgn0040230). It is a prot...	187.0	[0..6]	[215..73]
gi\|66524471 - gi\|66524471\|ref\|XP_397065.2\| PREDICTED: similar to diablo CG6224-PA isoform 1 [Apis mellifera]	185.0	[0..6]	[215..80]
gi\|54642184, gi\|... - gi\|54642184\|gb\|EAL30933.1\| GA19454-PA [Drosophila pseudoobscura], gi\|125978783\|ref\|XP_001353424.1\| G...	184.0	[0..6]	[215..75]
gi\|91081947 - gi\|91081947\|ref\|XP_967077.1\| PREDICTED: similar to CG6224-PA [Tribolium castaneum]	183.0	[0..6]	[215..85]
gi\|55244234, gi\|... - gi\|58379439\|ref\|XP_309921.2\| ENSANGP00000015075 [Anopheles gambiae str. PEST], gi\|55244234\|gb\|EAA056...	183.0	[0..6]	[215..45]
KLHDB_AEDAE - Kelch-like protein diablo OS=Aedes aegypti GN=dbo PE=3 SV=1	182.0	[0..6]	[215..42]
KLH20_PONAB - Kelch-like protein 20 OS=Pongo abelii GN=KLHL20 PE=2 SV=3 gi\|55731256 - gi\|55731256\|emb\|CAH92342.1\| hypothetical protein [Pongo abelii]	181.0	[0..6]	[215..69]
KELC_ANOST - Ring canal kelch homolog - Anopheles stephensi (Indo-Pakistan malaria mosquito)	181.0	[0..6]	[217..101]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPSTIVKLD VGGKIFKTTI FTLCKHDSML KTMFCTDVPV TKNEEGSVFI DRDSKHFRLI  60
   61 LNFLRDGQIA LPDSDREVRE VLAEASYFLL DPLIELCGER L

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	2nn2A
Description:	No description for 2nn2A was found.

Predicted Domain #2

Region A:
Residues: [102-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EQSLNPYYHL VSTVLEARKI IFATEKPIVV LRLPVYIATS GNQSYYFSET KFRELSEEYH  60
   61 KHVAFILITE PEFNEDCSWS FFLRAKKITA RIKGPMDCNL VEECMPKTVE RRREKKTWH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.09691
Match:	2eqxA
Description:	No description for 2eqxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits