YRC Public Data Repository - Protein Structure Prediction

Protein:	mev-1
Organism:	Caenorhabditis elegans
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mev-1.

Description	E-value	Query Range	Subject Range
gi\|157773679 - gi\|157773679\|ref\|XP_001664905.1\| hypothetical protein CBG24607 [Caenorhabditis briggsae AF16] C560_CAEBR - Succinate dehydrogenase cytochrome b560 subunit, mitochondrial OS=Caenorhabditis briggsae GN=mev-1 P...	189.0	[0..1]	[178..1]
gi\|2137070 - gi\|2137070\|pir\|\|I48085 integral membrane protein CII-3 - Chinese hamster (fragment)	162.0	[0..6]	[170..6]
gi\|57111445 - gi\|57111445\|ref\|XP_536140.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C precur...	156.0	[0..12]	[171..14]
gi\|95769404 - gi\|95769404\|gb\|ABF57433.1\| succinate dehydrogenase complex, subunit C isoform 1 precursor [Bos tauru...	154.0	[0..6]	[171..1]
gi\|53850596, gi\|... - gi\|53850596\|ref\|NP_001005534.1\| succinate dehydrogenase complex, subunit C [Rattus norvegicus], gi\|5...	154.0	[0..6]	[172..2]
gi\|109086211, gi... - gi\|109086211\|ref\|XP_001093733.1\| PREDICTED: similar to succinate dehydrogenase complex, subunit C is...	148.0	[0..6]	[171..2]
gi\|12832459, gi\|... - gi\|13384690\|ref\|NP_079597.1\| succinate dehydrogenase complex, subunit C, integral membrane protein [...	147.0	[0..6]	[155..2]
SDHC - succinate dehydrogenase complex, subunit C, integral membrane protein, 15kDa	147.0	[0..6]	[171..2]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINIPTAILC RLGARSSISR SFGTSIVTKS EAKTPIQKFG WEYLLKQRSK NRPIAPHLTV  60
   61 YQPQLTWMLS GFHRISGCVM AGTLLVGGIG FAVLPFDFTA FVDFIRSWNL PCAVTAVFKY 120
  121 IIAFPIIFHT LNGIRFLGFD LAKGVNNVGQ IYKSGYLVSG LSAILALAIV FNSCQNKSNK 180
  181 TA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.69897
Match:	1zoyC
Description:	Crystal Structure of Mitochondrial Respiratory Complex II from porcine heart at 2.4 Angstroms
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits