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View Structure Prediction Details

Protein: clp-1
Organism: Caenorhabditis elegans
Length: 113 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for clp-1.

Description E-value Query
Range
Subject
Range
clp-1 - status:Confirmed UniProt:P34308 protein_id:AAV58888.1
74.0 [0..1] [35..1]
gi|187021415, gi... - gi|39587383|emb|CAE75037.1| Hypothetical protein CBG22945 [Caenorhabditis briggsae], gi|187021415|em...
gi|157777248 - gi|157777248|ref|XP_001666690.1| hypothetical protein CBG22945 [Caenorhabditis briggsae AF16]
74.0 [0..1] [35..1]

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Predicted Domain #1
Region A:
Residues: [1-113]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDEEEIIQ KVEVKPDEFN GLIGSIAGNL IRDKVGGAGG DILGGLASNF FGGGGGGGGG  60
   61 GGGGGFGGGN GGFGGGIFIF KIVRQKFPKN SSSFFCVRKH LDSLKTSPCG LDQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.39794
Match: 1af0A
Description: Metalloprotease
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle