YRC Public Data Repository - Protein Structure Prediction

Protein:	snr-5
Organism:	Caenorhabditis elegans
Length:	85 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snr-5.

Description	E-value	Query Range	Subject Range
gi\|187029601, gi... - gi\|39589637\|emb\|CAE66872.1\| Hypothetical protein CBG12250 [Caenorhabditis briggsae], gi\|187029601\|em... gi\|157776384 - gi\|157776384\|ref\|XP_001666258.1\| hypothetical protein CBG12250 [Caenorhabditis briggsae AF16]	104.0	[0..1]	[85..1]
gi\|33876795 - gi\|33876795\|gb\|AAH02505.2\| SNRPF protein [Homo sapiens]	103.0	[0..2]	[75..45]
gi\|50728518 - gi\|50728518\|ref\|XP_416157.1\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	102.0	[0..3]	[75..205]
gi\|73978207 - gi\|73978207\|ref\|XP_539726.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	102.0	[0..3]	[75..195]
gi\|94388852 - gi\|94388852\|ref\|XP_919276.2\| PREDICTED: similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm p...	102.0	[0..3]	[75..152]
gi\|495021 - gi\|495021\|gb\|AAA28445.1\| membrane-associated protein [Drosophila melanogaster]	101.0	[0..1]	[82..1]
gi\|74353864 - gi\|74353864\|gb\|AAI02193.1\| SNRPF protein [Bos taurus]	100.0	[0..3]	[75..34]
AGAP002658-PA - small nuclear ribonucleoprotein polypeptide F\|protein_coding\|2R:25205095:25205361:1\|gene:AGAP002658 gi\|31212897, gi\|... - gi\|31212897\|ref\|XP_312266.1\| AGAP002658-PA [Anopheles gambiae str. PEST], gi\|30177439\|gb\|EAA07677.2\|...	100.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-85]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVQPVNPK PFLNSLTGKF VVCKLKWGME YKGVLVAVDS YMNLQLAHAE EYIDGNSQGN  60
   61 LGEILIRCNN VLYVGGVDGE NETSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.522879
Match:	1n9rA
Description:	Small nuclear ribonucleoprotein F, Smf
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: