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View Structure Prediction Details

Protein: lap-1
Organism: Caenorhabditis elegans
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lap-1.

Description E-value Query
Range
Subject
Range
AMPA_VIBVY - Probable cytosol aminopeptidase OS=Vibrio vulnificus (strain YJ016) GN=pepA PE=3 SV=1
AMPA_VIBVU - Probable cytosol aminopeptidase OS=Vibrio vulnificus GN=pepA PE=3 SV=1
AMPA_VIBVU - Probable cytosol aminopeptidase OS=Vibrio vulnificus (strain CMCP6) GN=pepA PE=3 SV=1
575.0 [0..1] [490..19]

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Predicted Domain #1
Region A:
Residues: [1-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQVLVRNGI QAVGDGLTSL IIVGKKSVLK NVTFEGKFKE VAQKFVTDGD SWNSMISRIP  60
   61 ASGRHPLHYE LAHLITVPDA SSRGNTPTNA HSIYKELKPI NYPEDTKNVH FVLFAEYPDV 120
  121 LSHVAAIART FCKFSMKTSG IRELNVNIDV VCDKLTNEDA VFLTDLSESV RETARLIDTP 180
  181 ANILTTDALV DEAVKVGNAT GSKITVIRGE ELLKAGFGGI YHVGKAGPTP PAFVVLSHEV 240
  241 PGSTEHIALV GKGVVYDTGG LQIKTKTGMP NMKRDMGGAA GMLEAYSALV KHGFSQTLHA 300
  301 CLCIVENNVS PIANKPDDII KMLSGKTVEI NNTDAEGRLI LADGVFYAKE TLKATTIFDM 360
  361 ATLTGAQAWL SGRLHGAAMT NDEQLENEII KAGKASGDLV APMLFAPDLF FGDLKSSIAD 420
  421 MKNSNLGKMD GPPSAVAGLF IGAHIGFGEG LRWLHLDIAA PAEVGDRGTG YGPALFSTLL 480
  481 GKYTSVPMLK Q

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 116.0
Match: 2hb6A
Description: No description for 2hb6A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle