YRC Public Data Repository - Protein Structure Prediction

Protein:	pqn-96
Organism:	Caenorhabditis elegans
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pqn-96.

Description	E-value	Query Range	Subject Range
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	156.0	[0..4]	[203..1487]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	138.0	[0..2]	[202..1545]
gi\|28916673, gi\|... - gi\|28916673\|ref\|NP_766184.1\| Sec24 related gene family, member C [Mus musculus], gi\|25955503\|gb\|AAH4...	138.0	[0..2]	[201..24]
gi\|114631257 - gi\|114631257\|ref\|XP_001144532.1\| PREDICTED: SEC24-related protein C isoform 3 [Pan troglodytes]	134.0	[0..2]	[199..24]
SEC24C - SEC24 family, member C (S. cerevisiae)	133.0	[0..2]	[199..24]
gi\|40746483, gi\|... - gi\|67517057\|ref\|XP_658413.1\| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	132.0	[0..5]	[202..1546]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYQSYPQQQQ PGYQPQQPSH PIVGAGAAPT MAPQNPYGQQ PFQPQFQQGQ YQQPSGQQYQ  60
   61 SMQQQFQSPQ QQAPTQPTHP DRESYQTALP ANVTPGWNDP PSMLPSAGTT PNRLSNMRRR 120
  121 PVDPSISGNV GYGTSSQTSN PYGASASPYG APQQNPQQYQ EQPQSYQTYQ QPQQQQPQYG 180
  181 QQQNPQQFGQ QYPGAGAPHQ QQHYGM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.29
Match:	2j63A
Description:	No description for 2j63A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits