YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00368
Organism:	Caenorhabditis elegans
Length:	181 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00368.

Description	E-value	Query Range	Subject Range
gi\|88176923, gi\|... - gi\|88176923\|gb\|EAQ84391.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11620...	212.0	[0..2]	[180..7]
gi\|114555735 - gi\|114555735\|ref\|XP_513093.2\| PREDICTED: similar to bet3 [Pan troglodytes]	212.0	[0..1]	[180..46]
gi\|157774503 - gi\|157774503\|ref\|XP_001665317.1\| hypothetical protein CBG10062 [Caenorhabditis briggsae AF16] TPPC3_CAEBR - Trafficking protein particle complex subunit 3 homolog OS=Caenorhabditis briggsae GN=trpp-3 PE=3 SV=...	210.0	[0..1]	[181..1]
gi\|42547085, gi\|... - gi\|46111535\|ref\|XP_382825.1\| hypothetical protein FG02649.1 [Gibberella zeae PH-1], gi\|42547085\|gb\|E...	208.0	[0..2]	[180..7]
gi\|60593497 - gi\|60593497\|pdb\|1SZ7\|A Chain A, Crystal Structure Of Human Bet3	207.0	[0..6]	[180..13]
gi\|49134378, gi\|... - gi\|67904198\|ref\|XP_682355.1\| hypothetical protein AN9086.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	207.0	[0..1]	[180..6]
gi\|73977068 - gi\|73977068\|ref\|XP_539594.2\| PREDICTED: similar to trafficking protein particle complex 3 (predicted...	207.0	[0..1]	[180..1]
gi\|89271912, gi\|... - gi\|89271912\|emb\|CAJ83649.1\| trafficking protein particle complex 3 [Xenopus tropicalis], gi\|62857629...	207.0	[0..1]	[180..1]
gi\|148230479, gi... - gi\|32450223\|gb\|AAH53802.1\| Trappc3-prov protein [Xenopus laevis], gi\|148230479\|ref\|NP_001080521.1\| t...	207.0	[0..1]	[180..1]
TPPC3_MOUSE - Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1 TPPC3_RAT - Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1	207.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAIKQNLA DSKKMSAELF CLTYGAMVTE MLKDYEDPKD VTIQLDKMGF NMGTRLADDF  60
   61 LAKNANVPRC VDTRQIADVL CRNAIPCYLG ISATASSWTS GDREFTITLE ANPLTELVQV 120
  121 PAHLVSAGLS YSQLIAGAIR GALEAVHFKV YASATDTGAN TEIRIRFDQV LKDSLPAGED 180
  181 D

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.045757
Match:	2j3rA
Description:	No description for 2j3rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits