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View Structure Prediction Details

Protein: CE00289
Organism: Caenorhabditis elegans
Length: 458 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00289.

Description E-value Query
Range
Subject
Range
AGAP011249-PA - pre-mRNA-splicing factor CWC26|protein_coding|3L:19999848:20002341:1|gene:AGAP011249
gi|116131626, gi... - gi|118779598|ref|XP_309395.3| AGAP011249-PA [Anopheles gambiae str. PEST], gi|116131626|gb|EAA05162....
189.0 [0..9] [456..203]

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Predicted Domain #1
Region A:
Residues: [1-251]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSKADYLKK YLSPASGDIE KKKKKKNKDK NKPSGLRLIE EDAFLSVDAA KTRDIGSDEE  60
   61 REEIEVLKQS VKKAKVVHGF KQTFAEVDAP KVIKPEPLSP DNSPPRGKRQ RHDSDNSPPR 120
  121 PSRKRNDSDN SPPRPSRNRH DSDKDNSPPR RRRHDSDNSP PRPSRKIREE SPSARNRRSP 180
  181 PRTRRDRHDS DNSPPRNRSR RDSDNSPPRR RPSSPARRRK DDDLSPPRKS RKIEEPKKIK 240
  241 KEEPDSDTET S

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [252-458]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRTLEGKRSG LQSARDLKEE SDKLRAKNSK MFEEMDTSVS GRFADTVYRQ KQTKKKGKDS  60
   61 EEDQAKKERE TKKTEELKEK YKSWNKGVAQ IEDRRAQLEE MARVAAEPMA RARDDDAMNA 120
  121 HLKEVLHAAD PMANMIQKKR RDTAIDRGEL VYPSYHGHFV PNRFGIAPGY RWDGVDRSNG 180
  181 FEGKLAKTEN TKTANQSEYY KSIAEYE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle