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View Structure Prediction Details

Protein: fozi-1
Organism: Caenorhabditis elegans
Length: 732 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for fozi-1.

Description E-value Query
Range
Subject
Range
gi|187031574, gi... - gi|39590878|emb|CAE65252.1| Hypothetical protein CBG10136 [Caenorhabditis briggsae], gi|187031574|em...
gi|157774627 - gi|157774627|ref|XP_001665379.1| hypothetical protein CBG10136 [Caenorhabditis briggsae AF16]
474.0 [0..1] [732..1]

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Predicted Domain #1
Region A:
Residues: [1-121]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLASSAPTA PSLLPPSSQP SAATTRADDC SSSTSPTNTS ASDASMEMLT SLMNGAVAAA  60
   61 AAPGNALVKQ ESPPLTTPPL FNPDLALLQF SQLFQAQQAM VQFHNQQKQQ QQIIQQQQQQ 120
  121 Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [122-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQQQQNQNPS QSQSSSSDRK RSYPCTFQYC VICQKDVHSS KLPCHIRQCH VAKPMFQCPA  60
   61 CDFTSTYSKN NVKSHMVSLH GLAGDPISYM DKYAGQVEEF MKLCFPNVRG RGRPMQGRSS 120
  121 PKSPTSPTQP GRRGSQASSL PSRRNTVSQN DLLATLQQHQ QQQAAFHPLR NLRFNPLQSI 180
  181 FPAVLANNNN NSVLATNKHV NNFLIKQEES EVPPITMPMQ DLKTMLDANS SPSPISLSSS 240
  241 IIPIQPIKPG ENAQPKYMKS LDWTIL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.09691
Match: 1y0fA
Description: No description for 1y0fA was found.

Predicted Domain #3
Region A:
Residues: [388-732]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDLQMKGTVF ADCRSNMELY AENIARKIEN TKAFQSFVLS DDMRTVVEEV RSRVSIQLFE  60
   61 VMFAIHRMDI KVLNQNLVDS LLQIAPTNSD AQLLRKMENL SDPNEEFLLG LTKIDHIEEK 120
  121 LETMKHMYRF PEQVELLKEN IIKYEIAVKV LSESRALRNV MQLVLAILNI GFFDDRQCLS 180
  181 INGFSVSDIS SILSTNTPSG QSVQSILVTI LKDEINLDLD ELFGLIDVLE KIENDDVNSV 240
  241 AQDLMVLDDK TVRAEKEMEH SGSNIPLSEF VENAKTISKE RWEHFKSLKT SIERLTIYLG 300
  301 SPLPRHQNLD AHSPFNNVLQ MLRSLKTAIE LDDASDDHHI NVSSP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 91.69897
Match: 2j1dG
Description: No description for 2j1dG was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle