YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00225
Organism:	Caenorhabditis elegans
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00225.

Description	E-value	Query Range	Subject Range
gi\|73957788 - gi\|73957788\|ref\|XP_546937.2\| PREDICTED: similar to RAS p21 protein activator 4 [Canis familiaris]	153.0	[0..27]	[143..992]
gi\|62088376 - gi\|62088376\|dbj\|BAD92635.1\| MGC13098 protein variant [Homo sapiens]	143.0	[0..26]	[135..22]
gi\|109066247 - gi\|109066247\|ref\|XP_001114618.1\| PREDICTED: similar to DNA-directed RNA polymerase II subunit J (DNA...	140.0	[0..26]	[143..74]
gi\|114612984 - gi\|114612984\|ref\|XP_001135267.1\| PREDICTED: similar to MGC13098 protein [Pan troglodytes]	137.0	[0..26]	[135..239]
gi\|42554141, gi\|... - gi\|46125119\|ref\|XP_387113.1\| hypothetical protein FG06937.1 [Gibberella zeae PH-1], gi\|42554141\|gb\|E...	134.0	[0..1]	[142..1]
gi\|32403784, gi\|... - gi\|32403784\|ref\|XP_322505.1\| hypothetical protein [Neurospora crassa], gi\|28918394\|gb\|EAA28069.1\| hy... gi\|85084361 - gi\|85084361\|ref\|XP_957305.1\| hypothetical protein NCU00419 [Neurospora crassa OR74A]	133.0	[0..1]	[143..1]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKNEKIVE EAEKVEAETM EVDEQPQETP QVDDEEDLNV PSKKKMEILD PKSFEQDPSN  60
   61 LTLIMYEEDH TIGNSIKHIL SRMDEVEFCG YNVPHPLEDK ILFRVQTKDG INALEVLAKA 120
  121 FESVEQIFST IRGKFEESYE QSQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.154902
Match:	1i3qK
Description:	RPB11
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits