YRC Public Data Repository - Protein Structure Prediction

Protein:	vha-14
Organism:	Caenorhabditis elegans
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vha-14.

Description	E-value	Query Range	Subject Range
VATD_CAEBR - V-type proton ATPase subunit D OS=Caenorhabditis briggsae GN=vha-14 PE=3 SV=1 gi\|157774515 - gi\|157774515\|ref\|XP_001665323.1\| hypothetical protein CBG10070 [Caenorhabditis briggsae AF16]	301.0	[0..3]	[257..4]
gi\|195488528, gi... - gi\|195488528\|ref\|XP_002092353.1\| GE11717 [Drosophila yakuba], gi\|194178454\|gb\|EDW92065.1\| GE11717 [D... Vha36-PA - The gene Vha36 is referred to in FlyBase by the symbol Dmel\Vha36 (CG8186, FBgn0022097). It is a pro... gi\|220955058, gi... - gi\|220955058\|gb\|ACL90072.1\| Vha36-PA [synthetic construct], gi\|220945146\|gb\|ACL85116.1\| Vha36-PA [sy...	267.0	[0..5]	[252..3]
gi\|94469066, gi\|... - gi\|94469066\|gb\|ABF18382.1\| vacuolar H+-ATPase V1 sector subunit D [Aedes aegypti], gi\|157124332\|ref\|...	267.0	[0..1]	[252..1]
gi\|46561758 - gi\|46561758\|gb\|AAT01084.1\| putative vacuolar ATP synthase subunit D [Homalodisca coagulata]	266.0	[0..5]	[252..3]
gi\|125810103\|ref... - GA20878-PA [Drosophila pseudoobscura], GA20878 [Drosophila pseudoobscura pseudoobscura] gi\|195172694, gi... - gi\|195172694\|ref\|XP_002027131.1\| GL20077 [Drosophila persimilis], gi\|194112944\|gb\|EDW34987.1\| GL2007... gi\|125810103, gi... - gi\|54636533\|gb\|EAL25936.1\| GA20878 [Drosophila pseudoobscura pseudoobscura], gi\|125810103\|ref\|XP_001...	266.0	[0..5]	[252..3]
gi\|58391015, gi\|... - gi\|58391015\|ref\|XP_318202.2\| ENSANGP00000010517 [Anopheles gambiae str. PEST], gi\|55236785\|gb\|EAA133... AGAP010298-PA - V-type H+-transporting ATPase subunit D\|protein_coding\|3R:52655893:52656940:1\|gene:AGAP010298	264.0	[0..1]	[252..1]
gi\|145019552, gi... - gi\|39971541\|ref\|XP_367161.1\| hypothetical protein MGG_07086 [Magnaporthe grisea 70-15], gb\|EAA56731....	259.0	[0..1]	[251..1]
gi\|91080509, gi\|... - gi\|91080511\|ref\|XP_975872.1\| PREDICTED: similar to putative vacuolar ATP synthase subunit D isoform ...	259.0	[0..1]	[252..1]
gi\|21410966 - gi\|21410966\|gb\|AAH31002.1\| ATPase, H+ transporting, lysosomal 34kDa, V1 subunit D [Homo sapiens]	258.0	[0..5]	[251..3]
tr\|M3WEF5\|M3WEF5... - ATPase H+ transporting V1 subunit D OS=Felis catus GN=ATP6V1D PE=4 SV=1 tr\|G1T2F8\|G1T2F8... - pep:known chromosome:oryCun2:20:4928193:4949005:1 gene:ENSOCUG00000012018 transcript:ENSOCUT00000012... gi\|57090225 - gi\|57090225\|ref\|XP_537484.1\| PREDICTED: similar to Vacuolar ATP synthase subunit D (V-ATPase D subun...	257.0	[0..5]	[251..3]

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Predicted Domain #1

Region A:
Residues: [1-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGGGKDRIA VFPSRMAQTL MKTRLKGAQK GHSLLKKKAD ALNLRFRDIL RKIVENKVLM  60
   61 GEVMKEAAFS LAEAKFTAGD FSHTVIQNVS QAQYRVRMKK ENVVGVFLPV FDAYQDGPDA 120
  121 YDLTGLGKGG ANIARLKKNY NKAIELLVEL ATLQTCFITL DEAIKVTNRR VNAIEHVIIP 180
  181 RIENTLTYIV TELDEMEREE FFRMKKIQAN KKKLKEQEAA QKALEGPGPG EDAAHSENNP 240
  241 PRNLLASEED NLPVLFN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.309804
Match:	PF01813.8
Description:	No description for PF01813.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits