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View Structure Prediction Details

Protein: gi|630639
Organism: Caenorhabditis elegans
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|630639.

Description E-value Query
Range
Subject
Range
zfp-1 - status:Confirmed UniProt:P34449 protein_id:AAK26139.1
399.0 [0..1] [204..8]
gi|157776005 - gi|157776005|ref|XP_001666068.1| hypothetical protein CBG06896 [Caenorhabditis briggsae AF16]
gi|187033833, gi... - gi|39585083|emb|CAE62734.1| Hypothetical protein CBG06896 [Caenorhabditis briggsae], gi|187033833|em...
158.0 [0..103] [196..83]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLIDISLFL LLGTLIVACT VKKEKIKERH NHNRTLLKRT VGGKRKDTGH RHRTSTIPPR  60
   61 DKSSLHAPTV KNGNSLSAVE PNGRIKIGYR LSPSVK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.234 b.34.5 Translation proteins SH3-like domain
View Download 0.204 a.21.1 HMG-box

Predicted Domain #2
Region A:
Residues: [97-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGEIVAPKAT VTPAVNTRKP INEAISEGII LDPTYFKNGG NLDSKSPKNQ KLAEELQQFI  60
   61 DNPGLGSNET STLTDDNDVP RVVAVPSQCK MFETTNQPTN SQLLLNSE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.649 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.649 N/A N/A c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.584 N/A N/A d.110.8 Description not found.
View Download 0.518 N/A N/A d.352.1 Description not found.
View Download 0.491 N/A N/A a.5.4 Elongation factor TFIIS domain 2
View Download 0.491 N/A N/A a.5.4 Elongation factor TFIIS domain 2
View Download 0.448 N/A N/A b.61.2 Metalloprotease inhibitor
View Download 0.380 N/A N/A a.28.1 ACP-like
View Download 0.346 N/A N/A d.109.2 C-terminal, gelsolin-like domain of Sec23/24
View Download 0.328 N/A N/A d.150.1 4'-phosphopantetheinyl transferase


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle