YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: far-2
Organism: Caenorhabditis elegans
Length: 182 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for far-2.

Description E-value Query
Range
Subject
Range
gi|157775879 - gi|157775879|ref|XP_001666005.1| hypothetical protein CBG06812 [Caenorhabditis briggsae AF16]
gi|39585020, gi|... - gi|39585020|emb|CAE62671.1| Hypothetical protein CBG06812 [Caenorhabditis briggsae], gi|187033770|em...
225.0 [0..1] [182..1]
far-1 - O. volvulus 20Kd antigenic peptide status:Confirmed UniProt:P34382 protein_id:CAA79616.1
212.0 [0..1] [182..1]
gi|22532421 - gi|22532421|gb|AAM97930.1| fatty acid- and retinol-binding protein 2 [Ancylostoma caninum]
200.0 [0..1] [181..1]
FAR1_ONCOC - Fatty-acid and retinol-binding protein 1 OS=Onchocerca ochengi GN=far-1 PE=1 SV=2
FAR1_ONCVO - Fatty-acid and retinol-binding protein 1 OS=Onchocerca volvulus GN=far-1 PE=1 SV=1
189.0 [0..7] [181..5]

Back

Predicted Domain #1
Region A:
Residues: [1-182]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRAFLVVAL ASVAVFSAPI PEVPQNFDDI PAEYKGLIPA EVAEHLKAIT AEEKAALKEL  60
   61 AQNHKEYKTE EEFKAALKEK SPSLYEKAGK LEALLTAKFE KLDATAQALV KKIIAKGREL 120
  121 HQQYLAGDKP TLDSLKELAK GYIAEYKALS DDAKATITAE FPILTGFFQN EKIQAIVGQY 180
  181 VN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.06
Match: 1jchA
Description: Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle