YRC Public Data Repository - Protein Structure Prediction

Protein:	far-1
Organism:	Caenorhabditis elegans
Length:	182 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for far-1.

Description	E-value	Query Range	Subject Range
gi\|157775879 - gi\|157775879\|ref\|XP_001666005.1\| hypothetical protein CBG06812 [Caenorhabditis briggsae AF16] gi\|39585020, gi\|... - gi\|39585020\|emb\|CAE62671.1\| Hypothetical protein CBG06812 [Caenorhabditis briggsae], gi\|187033770\|em...	228.0	[0..1]	[182..1]
far-2 - status:Confirmed UniProt:P34383 protein_id:CAA79617.1	221.0	[0..1]	[182..1]
gi\|22532421 - gi\|22532421\|gb\|AAM97930.1\| fatty acid- and retinol-binding protein 2 [Ancylostoma caninum]	204.0	[0..3]	[181..2]
FAR1_ONCOC - Fatty-acid and retinol-binding protein 1 OS=Onchocerca ochengi GN=far-1 PE=1 SV=2 FAR1_ONCVO - Fatty-acid and retinol-binding protein 1 OS=Onchocerca volvulus GN=far-1 PE=1 SV=1	198.0	[0..1]	[181..1]
FAR1_ONCGU - Fatty-acid and retinol-binding protein 1 OS=Onchocerca gutturosa GN=far-1 PE=1 SV=2	197.0	[0..1]	[181..1]
FAR1_ONCDU - Fatty-acid and retinol-binding protein 1 OS=Onchocerca dukei GN=far-1 PE=1 SV=2	196.0	[0..1]	[181..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRATIILAA VAALAFSAPV PEVPENYDDI PAEYKSLIPA EVSEHLKSIT PEEKAILKEV  60
   61 AKGYKDFKSE DDFLNALKEK SPTLHEKASK LHQIVKDKVN ALNDEAKAFV KKAIAEGRKI 120
  121 HAQYLAGEKP SLDTLKTTAK THIEAYKGLS QDAKDSIAKE FPILTGFFKN EKVQAMVGQY 180
  181 LN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	102.920819
Match:	PF05823.3
Description:	No description for PF05823.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits