YRC Public Data Repository - Protein Structure Prediction

Protein:	hsp-12.2
Organism:	Caenorhabditis elegans
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hsp-12.2.

Description	E-value	Query Range	Subject Range
gi\|8671873 - gi\|8671873\|gb\|AAF78436.1\|AC018748_15 Contains similarity to 17.6 KD class I heat shock protein from ...	108.0	[0..7]	[108..280]
gi\|38639431 - gi\|38639431\|gb\|AAR25848.1\| 17.5 kDa class I heat shock protein [Carica papaya]	106.0	[0..5]	[108..29]
HSP12_MEDSA - 18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1	106.0	[0..7]	[108..35]
gi\|41059801 - gi\|41059801\|gb\|AAR99375.1\| small heat shock protein [Prunus persica]	106.0	[0..12]	[108..36]
gi\|4185756 - gi\|4185756\|gb\|AAD09182.1\| cytosolic I small heat shock protein HSP17.2IC [Funaria hygrometrica]	105.0	[0..1]	[108..21]
gi\|662841 - gi\|662841\|gb\|AAA62175.1\| heat shock protein 27 [Homo sapiens]	105.0	[0..2]	[107..61]
gi\|23308655, gi\|... - gi\|52789217\|gb\|AAH83177.1\| Crystallin, alpha A [Danio rerio], gi\|23308655\|ref\|NP_694482.1\| crystalli...	105.0	[0..5]	[110..37]
gi\|39594095, gi\|... - gi\|39594095\|emb\|CAE70205.1\| Hypothetical protein CBG16680 [Caenorhabditis briggsae], gi\|187026454\|em... gi\|157774993 - gi\|157774993\|ref\|XP_001665562.1\| hypothetical protein CBG16680 [Caenorhabditis briggsae AF16]	105.0	[0..1]	[110..1]
CRYAA_TRASC, CRA... - Alpha-crystallin A chain (Fragment) OS=Trachemys scripta GN=CRYAA PE=2 SV=1, (Q91517) Alpha crystall... CRYAA_TRASE - Alpha-crystallin A chain (Fragment) OS=Trachemys scripta elegans GN=CRYAA PE=2 SV=1	105.0	[0..5]	[108..28]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAIEVTADA ASTWDWPLQH NDGVVKVHNT KEKFEVGLDV QFFTPKEIEV KVSGQELLIH  60
   61 CRHETRSDNH GTVAREINRA YKLPDDVDVS TVKSHLATRG VLTITASKKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.221849
Match:	1gmeA
Description:	Small heat shock protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.899294246597615	bayes_pls_golite062009
protein binding	0.766194779819271	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: