YRC Public Data Repository - Protein Structure Prediction

Protein:	dad3
Organism:	Schizosaccharomyces pombe
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dad3.

Description	E-value	Query Range	Subject Range
gi\|39978223, gi\|... - gi\|39978223\|ref\|XP_370499.1\| hypothetical protein MG06996.4 [Magnaporthe grisea 70-15], gb\|EAA55339....	120.0	[0..5]	[74..56]
gi\|114195380, gi... - gi\|115387581\|ref\|XP_001211296.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	119.0	[0..6]	[77..89]
gi\|169775255 - gi\|169775255\|ref\|XP_001822095.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769958 - gi\|83769958\|dbj\|BAE60093.1\| unnamed protein product [Aspergillus oryzae]	114.0	[0..6]	[74..26]
gi\|46107530, gi\|... - gi\|46107530\|ref\|XP_380824.1\| hypothetical protein FG00648.1 [Gibberella zeae PH-1], gi\|42545535\|gb\|E...	109.0	[0..5]	[74..14]
gi\|67515723, gi\|... - gi\|67515723\|ref\|XP_657747.1\| hypothetical protein AN0143.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	108.0	[0..6]	[73..38]
gi\|119187329, gi... - gi\|90303057\|gb\|EAS32688.1\| hypothetical protein CIMG_03712 [Coccidioides immitis RS], gi\|119187329\|r...	102.0	[0..6]	[67..30]
gi\|85080092 - gi\|85080092\|ref\|XP_956477.1\| hypothetical protein NCU01799 [Neurospora crassa OR74A] gi\|28917543, gi\|... - gi\|32415517\|ref\|XP_328238.1\| predicted protein [Neurospora crassa], gi\|28917543\|gb\|EAA27241.1\| conse...	102.0	[0..5]	[74..16]
gi\|169623494, gi... - gi\|169623494\|ref\|XP_001805154.1\| hypothetical protein SNOG_14989 [Phaeosphaeria nodorum SN15], gi\|11...	102.0	[0..4]	[76..20]
DAD3_ASHGO - DASH complex subunit DAD3 OS=Ashbya gossypii GN=DAD3 PE=3 SV=1 DAD3_ASHGO - DASH complex subunit DAD3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-10...	95.0	[0..4]	[80..3]
gi\|46434995, gi\|... - gi\|68485174\|ref\|XP_713496.1\| hypothetical protein CaO19.3871 [Candida albicans SC5314], gi\|46434995\|... orf19.3871 - orf19.3871 CGDID:CAL0002149 Assembly 19, Contig19-10193 (44983, 44567) CDS, reverse complemented, tr...	92.0	[0..6]	[81..25]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLEEKRALQ NQILAEYANL ASNLETLVKV LQDMVYNPSN NILDSLRDLE KEVGLVYTLY  60
   61 KASVWAILAD LENNQEGKSG MFQDES

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.568636
Match:	PF08656.1
Description:	No description for PF08656.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.947	N/A	N/A	a.8.4	Description not found.
View	Download	0.916	N/A	N/A	a.8.4	Description not found.
View	Download	0.898	N/A	N/A	a.8.4	Description not found.
View	Download	0.883	N/A	N/A	a.8.4	Description not found.
View	Download	0.878	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.871	N/A	N/A	f.15.1	Small-conductance potassium channel
View	Download	0.812	N/A	N/A	a.24.3	Cytochromes
View	Download	0.772	N/A	N/A	a.30.2	Homodimeric domain of signal transducing histidine kinase

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits