YRC Public Data Repository - Protein Structure Prediction

Protein:	sen15
Organism:	Schizosaccharomyces pombe
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sen15.

Description	E-value	Query Range	Subject Range
SEN15_NEUCR, SE1... - Probable tRNA-splicing endonuclease subunit sen-15 OS=Neurospora crassa GN=sen-15 PE=3 SV=1, (Q7RY78... SEN15_NEUCR - Probable tRNA-splicing endonuclease subunit tsp-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	156.0	[0..5]	[140..64]
gi\|109019244 - gi\|109019244\|ref\|XP_001109012.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRN...	154.0	[0..3]	[137..88]
gi\|114568358 - gi\|114568358\|ref\|XP_514052.2\| PREDICTED: similar to C1orf19 [Pan troglodytes]	153.0	[0..3]	[137..88]
gi\|73961158 - gi\|73961158\|ref\|XP_853269.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRNA-in...	152.0	[0..3]	[137..40]
gi\|12620198 - gi\|12620198\|gb\|AAG60614.1\|AF288394_1 C1orf19 [Homo sapiens]	149.0	[0..3]	[137..69]
gi\|50751174 - gi\|50751174\|ref\|XP_422291.1\| PREDICTED: similar to C1orf19 [Gallus gallus]	148.0	[0..3]	[142..38]
gi\|115496069, gi... - gi\|74354748\|gb\|AAI03405.1\| TRNA splicing endonuclease 15 homolog (S. cerevisiae) [Bos taurus], gi\|11...	147.0	[0..3]	[137..40]
gi\|145016271, gi... - gi\|39976855\|ref\|XP_369815.1\| hypothetical protein MGG_06330 [Magnaporthe grisea 70-15], gb\|EAA56359....	146.0	[0..10]	[140..1]
gi\|12856997, gi\|... - gi\|13385138\|ref\|NP_079953.1\| tRNA splicing endonuclease 15 homolog [Mus musculus], gi\|12856997\|dbj\|B...	145.0	[0..3]	[137..40]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHNTFLPND AVEEQKQNPY YGILRAVETD LRLGQRWCEL KVHVLDIDLK TKRPLLSGIP  60
   61 VNGQLKDKLQ YVLPLYLQET ISIEFLSSVF DSMKKLSLPL VKDARGLSGD EFFLYLGIMC 120
  121 SDSTIVYYKI TDGLIKPRQN DEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.522879
Match:	2gw6A
Description:	No description for 2gw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits