YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC977.11, SPBP...
Organism:	Schizosaccharomyces pombe
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC977.11, SPBP....

Description	E-value	Query Range	Subject Range
gi\|46116628, gi\|... - gi\|46116628\|ref\|XP_384332.1\| hypothetical protein FG04156.1 [Gibberella zeae PH-1], gi\|42548334\|gb\|E...	280.0	[0..2]	[306..127]
gi\|32411273, gi\|... - gi\|32411273\|ref\|XP_326117.1\| predicted protein [Neurospora crassa], gi\|28924506\|gb\|EAA33630.1\| predi... gi\|85109333 - gi\|85109333\|ref\|XP_962866.1\| hypothetical protein NCU06262 [Neurospora crassa OR74A]	259.0	[0..2]	[309..163]
gi\|111055450, gi... - gi\|169625437\|ref\|XP_001806122.1\| hypothetical protein SNOG_15991 [Phaeosphaeria nodorum SN15], gi\|11...	241.0	[0..2]	[309..192]
gi\|39939974, gi\|... - gi\|39939974\|ref\|XP_359524.1\| hypothetical protein MGG_05253 [Magnaporthe grisea 70-15], gb\|EAA52561....	234.0	[0..2]	[305..27]
gi\|71002552, gi\|... - gi\|71002552\|ref\|XP_755957.1\| chromosome condensation protein (CrcB) [Aspergillus fumigatus Af293], g...	234.0	[0..2]	[307..73]
gi\|169775987 - gi\|169775987\|ref\|XP_001822460.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771195 - gi\|83771195\|dbj\|BAE61327.1\| unnamed protein product [Aspergillus oryzae]	226.0	[0..2]	[309..74]
gi\|88183696, gi\|... - gi\|88183696\|gb\|EAQ91164.1\| hypothetical protein CHGG_03099 [Chaetomium globosum CBS 148.51], gi\|1162...	223.0	[0..2]	[307..152]
gi\|46097418, gi\|... - gi\|71007684\|ref\|XP_758136.1\| hypothetical protein UM01989.1 [Ustilago maydis 521], ref\|XP_399604.1\| ...	218.0	[0..8]	[306..176]
gi\|76573474 - gi\|76573474\|dbj\|BAE44558.1\| hypothetical protein [Candida albicans] gi\|68471219, gi\|... - gi\|77022434\|ref\|XP_888661.1\| hypothetical protein CaO19_7095 [Candida albicans SC5314], gi\|68471219\|...	214.0	[0..5]	[307..75]
YOR390W - Putative protein of unknown function gi\|190407679 - gi\|190407679\|gb\|EDV10946.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] YO390_YEAST - UPF0695 membrane protein YOR390W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOR390W...	212.0	[0..2]	[308..16]

Back

Predicted Domain #1

Region A:
Residues: [1-181]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLTQSYFCI MSMLGTLARL GLTALNTYPG APFSGLLWVQ FVGCVIMGFC QTESVFFPRP  60
   61 KHNATFLLAI TTGFCGSLTT FSSWMLQMFT GMANLDPFER RGRGYSFLSV VSDFMVTMCI 120
  121 AMSSLIWGKQ IGKTTGQWRI GKVAFAWPIP AHTHIVVRVL LLLLSICFFV GAAFYTAYTT 180
  181 N

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [182-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTHRGIGFSL IFSPFAALTR LYLARFLNSP QYFIPYGTLC ANVFATLLLS IMYMIPQITH  60
   61 CTPVSRSVMY GIQNGFCAVL STLSTFSNEL HTMPIKRAYI YCIISVAISF SICVIVDGAT 120
  121 AWGHGYTEKY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	3.721246
Match:	PF02537.6
Description:	No description for PF02537.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits