YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC20H4.08
Organism:	Schizosaccharomyces pombe
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC20H4.08.

Description	E-value	Query Range	Subject Range
gi\|38109818, gi\|... - gi\|39951106\|ref\|XP_363352.1\| hypothetical protein MG01278.4 [Magnaporthe grisea 70-15], gb\|EAA55627....	294.0	[0..2]	[265..928]
gi\|40741292, gi\|... - gi\|67528230\|ref\|XP_661925.1\| hypothetical protein AN4321.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	292.0	[0..2]	[265..894]
gi\|46134267, gi\|... - gi\|46134267\|ref\|XP_389449.1\| hypothetical protein FG09273.1 [Gibberella zeae PH-1], gi\|42554071\|gb\|E...	292.0	[0..2]	[265..874]
gi\|40882311 - gi\|40882311\|emb\|CAF06134.1\| related to growth regulation protein WHI2 [Neurospora crassa]	286.0	[0..2]	[265..8]
gi\|28921764, gi\|... - gi\|32406996\|ref\|XP_324102.1\| hypothetical protein [Neurospora crassa], gi\|28921764\|gb\|EAA31042.1\| hy... gi\|85067707 - gi\|85067707\|ref\|XP_960278.1\| hypothetical protein [Neurospora crassa OR74A]	277.0	[0..2]	[259..1002]
gi\|116202281, gi... - gi\|88177543\|gb\|EAQ85011.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11620...	269.0	[0..3]	[265..234]
gi\|115400799, gi... - gi\|115400799\|ref\|XP_001215988.1\| hypothetical protein ATEG_06810 [Aspergillus terreus NIH2624], gi\|1...	263.0	[0..2]	[259..881]
gi\|169774003 - gi\|169774003\|ref\|XP_001821470.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83769331 - gi\|83769331\|dbj\|BAE59468.1\| unnamed protein product [Aspergillus oryzae]	259.0	[0..2]	[259..8]
gi\|111064647 - gi\|111064647\|gb\|EAT85767.1\| hypothetical protein SNOG_07116 [Phaeosphaeria nodorum SN15]	254.0	[0..2]	[265..840]
YOFG_SCHPO - WHI2-like protein P4H10.16c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP4H10.16c P... SPBP4H10.16c - phosphatase activator	247.0	[0..3]	[263..2]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVPIDRINT VDTLANTLES NLKFFPEKIH FNIRGKLIVI DRVELPILPT TVLALLFPNG  60
   61 FHLLLKHEGG DVSSCFKCHK IDPSICKWIL DTYLPLFKKS NNAYPSKIAF NPISNTTLVL 120
  121 FLTECCNIYL FSENKKPVDQ KIRSDLLEQT FKNNDVFESA DKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.221849
Match:	2a79B
Description:	Mammalian Shaker Kv1.2 potassium channel- beta subunit complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [165-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRKGLSDGPL VDALQHCGFR YNDKWAKRVK EPKLMSLMSY IITTVESSSL SEEFLSKILK  60
   61 LWGQPGNKCW WINEVIKVNG SLINVWRRKQ WLLEVTIMGN RENSQD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.436	0.461	signal transduction	a.26.1	4-helical cytokines
View	Download	0.449	0.263	cytosol	d.38.1	Thioesterase/thiol ester dehydrase-isomerase
View	Download	0.557	0.000	cytosol	b.63.1	Oncogene products
View	Download	0.501	0.000	cytosol	a.4.3	ARID-like
View	Download	0.448	N/A	N/A	b.63.1	Oncogene products

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits