YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4B3.06c
Organism:	Schizosaccharomyces pombe
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4B3.06c.

Description	E-value	Query Range	Subject Range
gi\|24983438, gi\|... - gi\|26988655\|ref\|NP_744080.1\| arsenical resistance protein ArsH, putative [Pseudomonas putida KT2440]...	162.0	[0..3]	[199..26]
gi\|48729362, gi\|... - gi\|77458624\|ref\|YP_348129.1\| NADPH-dependent FMN reductase [Pseudomonas fluorescens Pf0-1], gi\|77382...	162.0	[0..2]	[197..14]
gi\|17938906, gi\|... - gi\|17938906\|ref\|NP_535694.1\| hypothetical protein Atu5322 [Agrobacterium tumefaciens str. C58], gi\|1... gi\|25374306 - pir\|\|AD3199 conserved hypothetical protein Atu5322 [imported] - Agrobacterium tumefaciens (strain C5...	159.0	[0..3]	[199..20]
gi\|113732408, gi... - gi\|113932187\|ref\|ZP_01418089.1\| NADPH-dependent FMN reductase [Caulobacter sp. K31], gi\|113732408\|gb...	157.0	[0..7]	[199..42]
gi\|90023418, gi\|... - gi\|90023418\|ref\|YP_529245.1\| arsenical resistance protein ArsH, putative [Saccharophagus degradans 2...	156.0	[0..4]	[199..22]
gi\|115360342, gi... - gi\|74017926\|ref\|ZP_00688548.1\| NADPH-dependent FMN reductase [Burkholderia ambifaria AMMD], gi\|72609...	155.0	[0..4]	[199..26]
ARREH_RHIME - NADPH-dependent FMN reductase ArsH OS=Rhizobium meliloti (strain 1021) GN=arsH PE=1 SV=1 gi\|15074006 - gi\|15074006\|emb\|CAC45653.1\| Conserved hypothetical protein [Sinorhizobium meliloti 1021]	155.0	[0..2]	[199..25]
gi\|126167222, gi... - gi\|84321002\|ref\|ZP_00969368.1\| COG0431: Predicted flavoprotein [Pseudomonas aeruginosa C3719], gi\|25... gi\|218771972, gi... - gi\|218891746\|ref\|YP_002440613.1\| putative arsenical resistance protein [Pseudomonas aeruginosa LESB5... gi\|107101726 - gi\|107101726\|ref\|ZP_01365644.1\| hypothetical protein PaerPA_01002770 [Pseudomonas aeruginosa PACS2]	154.0	[0..4]	[199..16]

Back

Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLPEKLLKI TPKILVIMGS VRSKRLCPTI ATWVGEMGKR ETNFDYEKVD LTDWPLSMSD  60
   61 EPGLPIMGID VYTQEHTKAW GSKIAGADGF VFVTPQYNGG YPAILKNALD HLYHEWNGKP 120
  121 LLIVSYGGHG GGDCASQLKH VAGFLKMRVA PTMPALTLPR DKIVQGVVDP AVEFTKHLGE 180
  181 LKKAFGEFSQ LFESNPERKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.154902
Match:	1t0iA
Description:	YLR011wp, a Saccharomyces cerevisiae NA(D)PH-dependent FMN reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.166792033632621	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: