YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC594.04c
Organism:	Schizosaccharomyces pombe
Length:	338 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC594.04c.

Description	E-value	Query Range	Subject Range
gi\|28917452, gi\|... - gi\|32403106\|ref\|XP_322166.1\| hypothetical protein [Neurospora crassa], gi\|28917452\|gb\|EAA27154.1\| hy... gi\|85079639 - gi\|85079639\|ref\|XP_956390.1\| hypothetical protein [Neurospora crassa OR74A]	281.0	[0..1]	[320..9]
gi\|42553270, gi\|... - gi\|46124679\|ref\|XP_386893.1\| hypothetical protein FG06717.1 [Gibberella zeae PH-1], gi\|42553270\|gb\|E...	280.0	[0..1]	[320..3]
gi\|145021288, gi... - gi\|39969087\|ref\|XP_365934.1\| hypothetical protein MGG_10154 [Magnaporthe grisea 70-15], gb\|EAA57479....	272.0	[0..1]	[319..3]
gi\|49094464, gi\|... - gi\|67536772\|ref\|XP_662160.1\| hypothetical protein AN4556.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	257.0	[0..1]	[322..5]
gi\|88181705, gi\|... - gi\|88181705\|gb\|EAQ89173.1\| hypothetical protein CHGG_05792 [Chaetomium globosum CBS 148.51], gi\|1161...	238.0	[0..1]	[319..3]
gi\|66847033, gi\|... - gi\|70989105\|ref\|XP_749402.1\| DUF1295 domain protein [Aspergillus fumigatus Af293], gi\|66847033\|gb\|EA... gi\|159128817 - gi\|159128817\|gb\|EDP53931.1\| DUF1295 domain protein [Aspergillus fumigatus A1163]	237.0	[0..1]	[322..5]
gi\|49076808, gi\|... - gi\|71021281\|ref\|XP_760871.1\| hypothetical protein UM04724.1 [Ustilago maydis 521], ref\|XP_402339.1\| ...	228.0	[0..6]	[319..12]
gi\|111056748, gi... - gi\|169622902\|ref\|XP_001804859.1\| hypothetical protein SNOG_14676 [Phaeosphaeria nodorum SN15], gi\|11...	225.0	[0..1]	[320..12]
gi\|83769901 - gi\|83769901\|dbj\|BAE60036.1\| unnamed protein product [Aspergillus oryzae] gi\|169775141 - gi\|169775141\|ref\|XP_001822038.1\| hypothetical protein [Aspergillus oryzae RIB40]	223.0	[0..1]	[322..5]
gi\|114190594, gi... - gi\|115386110\|ref\|XP_001209596.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	222.0	[0..1]	[322..5]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIIYSASDA AKWKVAVSPY LYQLSNLKLL FTGKLNFADF YYNTNPFVVG LLLSFILGNV  60
   61 LWGVSVWTKN TSQVDRLWPI LPTAFSLHFL FYGLGYNIAS RRLMIMAFLQ TLWSARLTYN 120
  121 YYRKGGYNRG AEDYRWVRVR QIMPKWIYPL FHYF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [155-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YIHIFQVLHL YLLASPTYIA MLAGNERAFG AWDWIALELF MFMFVLEMLA DQQQWDYYEA  60
   61 RNHYNVDKTV PPRFKYDLLS LGRGFNATGL FRWSRHPNFL AEQLIWLSFY LFGAIASESL 120
  121 LNWTIFAWLG LVGVFQGSTR LTEKMSCEKY PLYRVYQDKV GRFFPRLDGS HWDIVDDDAS 180
  181 LKED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits