YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC513.02
Organism:	Schizosaccharomyces pombe
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC513.02.

Description	E-value	Query Range	Subject Range
GPM1 - Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycer... PMG1_YEAST - Phosphoglycerate mutase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPM1 PE=1 SV=3 gi\|151941656 - gi\|151941656\|gb\|EDN60018.1\| phosphoglycerate mutase [Saccharomyces cerevisiae YJM789] gi\|190409687 - gi\|190409687\|gb\|EDV12952.1\| phosphoglycerate mutase [Saccharomyces cerevisiae RM11-1a]	181.0	[0..7]	[215..1]
gi\|110647741, gi... - gi\|110834630\|ref\|YP_693489.1\| phosphoglycerate mutase [Alcanivorax borkumensis SK2], gi\|110647741\|em...	181.0	[0..6]	[212..1]
gi\|84693499, gi\|... - gi\|84715034\|ref\|ZP_01022256.1\| Phosphoglycerate mutase 1 [Polaromonas naphthalenivorans CJ2], gi\|846...	179.0	[0..7]	[212..37]
gi\|91209783, gi\|... - gi\|91209783\|ref\|YP_539769.1\| phosphoglycerate mutase 1 [Escherichia coli UTI89], gi\|91071357\|gb\|ABE0... gi\|237707289, gi... - gi\|237707289\|ref\|ZP_04537770.1\| phosphoglyceromutase [Escherichia sp. 3_2_53FAA], gi\|226898499\|gb\|EE... gi\|26107120, gi\|... - gi\|26246721\|ref\|NP_752761.1\| phosphoglyceromutase [Escherichia coli CFT073], gi\|26107120\|gb\|AAN79304...	178.0	[0..1]	[212..1]
gi\|91786788, gi\|... - gi\|91786788\|ref\|YP_547740.1\| phosphoglycerate mutase [Polaromonas sp. JS666], gi\|91696013\|gb\|ABE4284...	178.0	[0..6]	[203..46]
gi\|49525272 - gi\|49525272\|emb\|CAG58885.1\| unnamed protein product [Candida glabrata] gi\|50287073, gi\|... - gi\|50287073\|ref\|XP_445966.1\| unnamed protein product [Candida glabrata], gi\|49525272\|emb\|CAG58885.1\|...	177.0	[0..7]	[215..1]
GPMA_CHLPM - 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase OS=Chlorobium phaeovibrioides (strain DSM ...	177.0	[0..7]	[212..1]
gi\|23508399, gi\|... - gi\|23508399\|ref\|NP_701068.1\| phosphoglycerate mutase, putative [Plasmodium falciparum 3D7], gi\|23496...	177.0	[0..6]	[212..2]

Back

Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKGIDKTI YFVRHGQVSH DVDENGVHRE HDPLLNDEGR KQALQLQHDL DAEKLPIELI  60
   61 LVSPMRRALE TMKIGFQHYI EDKHIPVKVI PLLQDCGDWA CNVGSYTKDL EKQFPGYDYT 120
  121 ACHEDPVFPK KEKIYKADYK TSIQRSRVLA EFFAKVPEKV FAVVTHGVDI RLFQKIQKPE 180
  181 DSLDAVPKEH SFSPCQHEEF RMHYEDDKNW NFEPVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.045757
Match:	1bq3D
Description:	Phosphoglycerate mutase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.610716769500575	bayes_pls_golite062009
binding	0.125625514513293	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: