YRC Public Data Repository - Protein Structure Prediction

Protein:	set6
Organism:	Schizosaccharomyces pombe
Length:	483 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for set6.

Description	E-value	Query Range	Subject Range
gi\|236461142, gi... - gi\|74209105\|dbj\|BAE24950.1\| unnamed protein product [Mus musculus], gi\|236461142\|ref\|NP_033892.2\| SE...	326.0	[0..6]	[463..9]
gi\|197102816 - gi\|197102816\|ref\|NP_001125377.1\| SET and MYND domain containing 1 [Pongo abelii] gi\|55727869 - gi\|55727869\|emb\|CAH90687.1\| hypothetical protein [Pongo abelii]	320.0	[0..6]	[463..9]
gi\|57098309 - gi\|57098309\|ref\|XP_532967.1\| PREDICTED: similar to SET and MYND domain containing protein 1 isoform ...	320.0	[0..6]	[463..9]
gi\|76629522 - gi\|76629522\|ref\|XP_617566.2\| PREDICTED: similar to SET and MYND domain containing protein 1 isoform ...	318.0	[0..6]	[463..9]
gi\|190689781, gi... - gi\|190691149\|gb\|ACE87349.1\| SET and MYND domain containing 1 protein [synthetic construct], gi\|19068... SMYD1 - SET and MYND domain containing 1	317.0	[0..6]	[463..9]
gi\|109473648, gi... - gi\|157819445\|ref\|NP_001100065.1\| SET and MYND domain containing 1 [Rattus norvegicus], gi\|149036367\|...	317.0	[0..6]	[463..9]

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Predicted Domain #1

Region A:
Residues: [1-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAPLIASVI LPEFGKGTVA TDNIPIGKII IRKRVDILSL DSANLTRTCS TCTEEKVKTQ  60
   61 RCAACKIIHY CSKGCQKADW PFHKLECKAL QASKQNGILP SVCRLLIRLY LLWQKNPAII 120
  121 EPMEGHQNEF QAVSSSWSDA ELIASAASHY TQIYQAELFQ KLFCRLAVNA MNLVTSSFDS 180
  181 LGMCLDTILC RLNHSCDPNC QIIFDGAIVQ LVSKRDIKKD EQLFISYIDI RLPKSIRQKQ 240
  241 LLKKYFFSCY CPRCENDHTT KETDGSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.39794
Match:	2r3aA
Description:	No description for 2r3aA was found.

Predicted Domain #2

Region A:
Residues: [268-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WMGRLRNSKS LMKNLAMARD LWSCGWKQTA FPWSNLLHHI KLGMLDESNF NGAFAALYLK  60
   61 SSADEFLDAL HVVDEYQLLL LGKQVAMEVK HLMFPNDKPL EMEFPSSSQP QQTVPTNNSL 120
  121 FLLKNIPSFG GLHHCILGRY SISLDDFVLW LLDRAQRLQQ AVRISHPSTT FCSNVENDIK 180
  181 EIFEVCKDYC MLHVQNNLKA FEEKLWAACK DFLVTY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits