YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC11B10.07c
Organism:	Schizosaccharomyces pombe
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC11B10.07c.

Description	E-value	Query Range	Subject Range
gi\|42547514, gi\|... - gi\|46137051\|ref\|XP_390217.1\| hypothetical protein FG10041.1 [Gibberella zeae PH-1], gi\|42547514\|gb\|E...	500.0	[0..1]	[367..15]
gi\|49650777 - gi\|49650777\|emb\|CAG77710.1\| YALI0F02475p [Yarrowia lipolytica] gi\|49650777, gi\|... - gi\|50554997\|ref\|XP_504907.1\| YALI0F02475p [Yarrowia lipolytica], gi\|49650777\|emb\|CAG77710.1\| unnamed...	470.0	[0..1]	[368..1]
gi\|83770983 - gi\|83770983\|dbj\|BAE61116.1\| unnamed protein product [Aspergillus oryzae] gi\|238490103, gi... - gi\|238490103\|ref\|XP_002376289.1\| LEM3/CDC50 family protein [Aspergillus flavus NRRL3357], gi\|2206986... gi\|169764110 - gi\|169764110\|ref\|XP_001727955.1\| hypothetical protein [Aspergillus oryzae RIB40]	466.0	[0..7]	[371..21]
gi\|119196363, gi... - gi\|90307571\|gb\|EAS37202.1\| hypothetical protein CIMG_02556 [Coccidioides immitis RS], gi\|119196363\|r... gi\|240110908 - gi\|240110908\|gb\|EER29064.1\| LEM3 family / CDC50 family protein [Coccidioides posadasii C735 delta SO...	464.0	[0..4]	[370..19]
gi\|70991342, gi\|... - gi\|70991342\|ref\|XP_750520.1\| LEM3/CDC50 family protein [Aspergillus fumigatus Af293], gi\|66848152\|gb... gi\|159130993 - gi\|159130993\|gb\|EDP56106.1\| LEM3/CDC50 family protein [Aspergillus fumigatus A1163]	462.0	[0..3]	[371..20]
MUG89_SCHPO - Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=m... mug89 - CDC50 domain protein	459.0	[0..14]	[371..20]
gi\|71005300, gi\|... - gi\|71005300\|ref\|XP_757316.1\| hypothetical protein UM01169.1 [Ustilago maydis 521], ref\|XP_398784.1\| ...	456.0	[0..4]	[370..27]
orf19.11026, orf... - LEM3 CGDID:CAL0005904 Assembly 19, Contig19-10183 (33797, 35116) CDS, translated using codon table 1... gi\|46436500, gi\|... - gi\|68482287\|ref\|XP_714901.1\| hypothetical protein CaO19.3542 [Candida albicans SC5314], gi\|68482160\|...	455.0	[0..2]	[370..36]
YNR048W - Protein that interacts specifically in vivo with phospholipid translocase (flippase) Dnf3p; similar ... gi\|207341542 - gi\|207341542\|gb\|EDZ69568.1\| YNR048Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190408954 - gi\|190408954\|gb\|EDV12219.1\| cell division control protein 50 [Saccharomyces cerevisiae RM11-1a] YN8S_YEAST - Uncharacterized protein YNR048W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR048W ...	453.0	[0..2]	[370..9]
gi\|49256669, gi\|... - gi\|49256669\|gb\|AAH74040.1\| Transmembrane protein 30A [Danio rerio], gi\|182890382\|gb\|AAI64201.1\| Tmem...	452.0	[0..10]	[350..23]

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Predicted Domain #1

Region A:
Residues: [1-203]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTEIVKKP KHKRFKRPDK SRFVQQTLPA WQFIFTPWTV LPLLFLLGIV FAPLGAGMFV  60
   61 ASRRVKELRI DYTDCMNIGD EFKQVPSTNI EFQYKNVKNV TAMWKSSGDV CTLRFQIPEE 120
  121 MTSPVFAFYR LKNFYQNHRR YTVSADMFQL LGEARTVAQL KSYGFCKPLE ANEEGKPYYP 180
  181 CGIIANSLFN DSYSSLLRYE SFD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [204-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSNSLGLYNM TTNGTAWPED RERYKKTKYN ASQIVPPPNW AKMFPNGYTD DNIPDVSTWD  60
   61 AFQIWMRAAA LPTFSKLALR NVTTALQPGI YEMNITYNFP VTEYKGTKTI MFSTTSVIGG 120
  121 KNYFLGILYF VIGGLCAASG VILSIACLIK PRRVGDPRYL SWNRGKSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits