YRC Public Data Repository - Protein Structure Prediction

Protein:	tim14
Organism:	Schizosaccharomyces pombe
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim14.

Description	E-value	Query Range	Subject Range
gi\|50355737, gi\|... - gi\|50355737\|gb\|AAT75262.1\| putative DnaJ like protein [Oryza sativa (japonica cultivar-group)], gi\|...	131.0	[0..41]	[131..3]
DNAJ_EHRRW - Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Welgevonden) GN=dnaJ PE=3 SV=1	130.0	[0..47]	[137..1]
DNAJ_EHRRG - Chaperone protein DnaJ OS=Ehrlichia ruminantium (strain Gardel) GN=dnaJ PE=3 SV=1	130.0	[0..47]	[137..1]
gi\|4210948 - gi\|4210948\|gb\|AAD12055.1\| DnaJ protein [Hevea brasiliensis]	129.0	[0..41]	[135..3]
gi\|10945671, gi\|... - gi\|10945671\|gb\|AAG24643.1\|AF308738_1 J2P [Daucus carota], gi\|10945669\|gb\|AAG24642.1\|AF308737_1 J1P [...	129.0	[0..41]	[133..3]
gi\|4008159 - gi\|4008159\|dbj\|BAA35121.1\| DnaJ homolog [Salix gilgiana]	129.0	[0..41]	[133..3]
gi\|219886877, gi... - pir\|\|T01643 DnaJ protein homolog ZMDJ1 - maize, gi\|2984709\|gb\|AAC08009.1\| DnaJ-related protein ZMDJ1...	129.0	[0..41]	[131..3]

Back

Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAILLGVG IAATAAAGKI GVDAFRKYRN LNGGVKAFLK GGFESKMSRA EAIQILSLNN  60
   61 RTLTRQKIKE AHRRLMLANH PDRGGSPYVA SKVNEAKSLL DADRSIRKFS SWALPVSKQR 120
  121 SMPSVLEAVK WLEYSSIPKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.69897
Match:	2guzA
Description:	No description for 2guzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits