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View Structure Prediction Details

Protein: cog1
Organism: Schizosaccharomyces pombe
Length: 701 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for cog1.

Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVETDLMSSH SSNWKEIFRT HSIAQTIQLE KFVSQQIEEK GRELQQNVCF NYQSFIEASE  60
   61 NLSNIRNNLE KVLQNSYEFQ SMVSLPKVDR VSKFLSD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 21.327902
Match: PF08700.2
Description: No description for PF08700.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NESISQTSGD YFIFLQRFYA HAILFVMELF NKEQYLQSSK LLIFCLRILP ADLPNDHQCH  60
   61 ILVNRLESCK NYLNNRLKQA MTSSLSKVSV VTSWILLNQA NISSGLDIFL QECEDQLLIL 120
  121 NDAREFSLTF LNTLKLARDF PNEIRSYLEA SKNFNIFKEK EILRNICLDE CYLKAYFSA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [277-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDVKVTTPFE TLQQFDGDNI LQQWKLSFFS KISHSEKSFF SNATSLTTLY QILEGLLSEL  60
   61 SEPQFKEFYE LWNSILQNHF IISSRNIIDS LGLYVNKIKE KLQICFEIPP TN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.928 a.8.4 Description not found.

Predicted Domain #4
Region A:
Residues: [389-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFDPWSFQLK QQVLNELKQN ILPACGMDDG FQRFWQSLAS FDMVLDESLQ VLKKLQTLHL  60
   61 SFTLGDIIPN YLTLADYLLN FVKTSFAQIY ELVCSFVNNV AVMESSSEKQ LRTSRCLKIV 120
  121 RLLKQFRHMD ES

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.955 a.29.13 Description not found.

Predicted Domain #5
Region A:
Residues: [521-701]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPFDDLIYKL QNILVRELTD FTTGIYINES KINLDVAACI TGNFFGPSFA LYNSLIMLID  60
   61 KLEVLGFDIV SDKFKGLLTP NLFESLFILN LERLKAAKSM DHMKQNTFDM EFINYLSDFT 120
  121 NNPREVIDYQ HFIELIDLHV QDEFSKEDFD TVRANVKECV PKLLSFFTVL LPRVKAQKVI 180
  181 T

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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