YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAP8A3.03
Organism:	Schizosaccharomyces pombe
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP8A3.03.

Description	E-value	Query Range	Subject Range
S39AE_MOUSE - Zinc transporter ZIP14 OS=Mus musculus GN=Slc39a14 PE=1 SV=1	247.0	[0..48]	[453..62]
gi\|114619267 - gi\|114619267\|ref\|XP_531112.2\| PREDICTED: solute carrier family 39 (zinc transporter), member 14 [Pan...	242.0	[0..49]	[453..366]
gi\|109502680, gi... - ref\|XP_224332.2\| similar to cDNA sequence BC021530 [Rattus norvegicus], gi\|109502680\|ref\|XP_00107014...	239.0	[0..54]	[453..66]
gi\|109085864 - gi\|109085864\|ref\|XP_001106660.1\| PREDICTED: similar to solute carrier family 39 (zinc transporter), ...	230.0	[0..49]	[453..316]
gi\|55729113 - gi\|55729113\|emb\|CAH91293.1\| hypothetical protein [Pongo abelii] gi\|55729113\|emb\|... - hypothetical protein [Pongo pygmaeus]	224.0	[0..49]	[453..108]
gi\|505102 - gi\|505102\|dbj\|BAA06685.1\| KIAA0062 [Homo sapiens]	224.0	[0..49]	[453..104]
gi\|76624658 - gi\|76624658\|ref\|XP_593460.2\| PREDICTED: similar to solute carrier family 39 (zinc transporter), memb...	223.0	[0..49]	[453..131]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLQRFFIY GLFLACFYTT VFGEKHFEAE EYRDSFLSQE NMNKINHTTI ERLFREMTEN  60
   61 DPSLLSSSKT LAELSKGELA KAREDLKSVL SFLKNNLPVD TESSSEAFTI EKDNNS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.694	d.189.1	PX domain
View	Download	0.649	d.189.1	PX domain
View	Download	0.612	a.39.1	EF-hand
View	Download	0.553	a.4.3	ARID-like
View	Download	0.496	d.56.1	GroEL-intermediate domain like

Predicted Domain #2

Region A:
Residues: [117-271]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CVWLNSVKSF VEKQFSYSSG TNGILATFLT AIPPNIFILL VPKSFDTSML NLFVAVSAGS  60
   61 LLGDVFLQLL PTVYSTNGGD FPASSVYSIL IGALVFFLMD KGIRILIHER PSSLSKPKKD 120
  121 GEETSSVNKP SASSTQTDVK GVEGLRKRNV KDDQN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [272-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKGHEPDLIR HVVEEVSEEY NDKTVVYLNL LCDSFHNFMD GLAITSAFFT NTSIGISTTF  60
   61 AVLLHEIPAE IGDLAILLRN GYTKSQVLVL QMITMVTGLL GAIVATYIYT ASSSSSPYGS 120
  121 FLLQLEDKLL PFTAGGFLYI AYLGVFPELL EINLSKGKLG NMIYTALYMM FIVGGFSFLY 180
  181 YV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits