YRC Public Data Repository - Protein Structure Prediction

Protein:	pcl1
Organism:	Schizosaccharomyces pombe
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pcl1.

Description	E-value	Query Range	Subject Range
gi\|48780704, gi\|... - gi\|91778488\|ref\|YP_553696.1\| hypothetical protein Bxe_B1618 [Burkholderia xenovorans LB400], gi\|9169...	226.0	[0..19]	[233..156]
gi\|254997777 - gi\|254997777\|dbj\|BAH88378.1\| hypothetical protein [Streptococcus mutans NN2025] gi\|24379108, gi\|... - gi\|24379108\|ref\|NP_721063.1\| hypothetical protein SMU.635 [Streptococcus mutans UA159], gi\|24377010\|...	226.0	[0..5]	[233..11]
gi\|110637695, gi... - gi\|110637695\|ref\|YP_677902.1\| integral membrane protein [Cytophaga hutchinsonii ATCC 33406], gi\|1102... gi\|48855117 - gi\|48855117\|ref\|ZP_00309277.1\| COG1814: Uncharacterized membrane protein [Cytophaga hutchinsonii]	225.0	[0..11]	[233..9]
gi\|88714194, gi\|... - gi\|88714194\|ref\|ZP_01108270.1\| hypothetical protein FB2170_10324 [Flavobacteriales bacterium HTCC217...	224.0	[0..13]	[233..15]
gi\|77698482, gi\|... - gi\|77741667\|ref\|ZP_00810149.1\| Protein of unknown function DUF125 [Rhodopseudomonas palustris BisA53...	223.0	[0..6]	[233..2]
gi\|134134791, gi... - gi\|67549913\|ref\|ZP_00427752.1\| Protein of unknown function DUF125 [Burkholderia vietnamiensis G4], g...	223.0	[0..19]	[233..137]
gi\|56552756, gi\|... - gi\|56552756\|ref\|YP_163595.1\| nodulin 21 like protein [Zymomonas mobilis subsp. mobilis ZM4], gi\|5654... gi\|6478223 - gi\|6478223\|gb\|AAF13747.1\|AF117351_4 unknown [Zymomonas mobilis subsp. mobilis ZM4]	222.0	[0..7]	[233..8]
gi\|50084364, gi\|... - gi\|50084364\|ref\|YP_045874.1\| putative nodulin 21-related protein [Acinetobacter sp. ADP1], gi\|495303...	218.0	[0..7]	[236..4]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWSIFEARPK EAHSVNKIGW LRASVLGAND GILSLSGLLV GVVAANADIK VILITGVAGL  60
   61 MSGALSMAVG EYVSVSSQAD LEDADLQLER REMDADWDAE VDELAAIYRG RGLDEELSRT 120
  121 VAVQLMEYNA LEAHARDELG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [141-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INIHTTAKPT LAALSSAASF SVGGIFPLLT SLITPLEYLS LVLPIATMFF LGMLGFVGAH  60
   61 IGGAKRVRAI LRAVVLGLLA MAATALVGRL LEIHALSLQY AI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits