YRC Public Data Repository - Protein Structure Prediction

Protein:	ask1
Organism:	Schizosaccharomyces pombe
Length:	307 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ask1.

Description	E-value	Query Range	Subject Range
gi\|46136557, gi\|... - gi\|46136557\|ref\|XP_389970.1\| hypothetical protein FG09794.1 [Gibberella zeae PH-1], gi\|42554813\|gb\|E...	371.0	[0..5]	[305..15]
gi\|38111173, gi\|... - gi\|39971655\|ref\|XP_367218.1\| hypothetical protein MGG_07143 [Magnaporthe grisea 70-15], gb\|EAA56788....	334.0	[0..5]	[306..16]
gi\|70995764, gi\|... - gi\|70995764\|ref\|XP_752637.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668502... gi\|159131390 - gi\|159131390\|gb\|EDP56503.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	305.0	[0..5]	[289..16]
gi\|28923502, gi\|... - gi\|32408311\|ref\|XP_324637.1\| hypothetical protein [Neurospora crassa], gi\|28923502\|gb\|EAA32681.1\| hy... gi\|85105227 - gi\|85105227\|ref\|XP_961917.1\| hypothetical protein [Neurospora crassa OR74A]	276.0	[0..5]	[290..16]
gi\|1236275 - gi\|1236275\|dbj\|BAA12199.1\| unnamed protein product [Schizosaccharomyces pombe]	266.0	[0..88]	[307..1]
gi\|42820672 - gi\|42820672\|emb\|CAF31985.1\| hypothetical protein, conserved [Aspergillus fumigatus]	244.0	[0..42]	[289..18]
gi\|83770714 - gi\|83770714\|dbj\|BAE60847.1\| unnamed protein product [Aspergillus oryzae] gi\|169763572 - gi\|169763572\|ref\|XP_001727686.1\| hypothetical protein [Aspergillus oryzae RIB40]	223.0	[0..5]	[289..16]
gi\|114197404, gi... - gi\|115491833\|ref\|XP_001210544.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	222.0	[0..5]	[281..17]
gi\|116196446, gi... - gi\|88180734\|gb\|EAQ88202.1\| hypothetical protein CHGG_04821 [Chaetomium globosum CBS 148.51], gi\|1161...	205.0	[0..19]	[306..292]
gi\|40746438, gi\|... - gi\|67517688\|ref\|XP_658630.1\| hypothetical protein AN1026.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	202.0	[0..81]	[303..8]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLEQLERL EQSITLALYE IDANFSKCHR TVTTKILPIV EKYAKNCNTI WDSSKFWKQF  60
   61 FEASANVSLS GVEEP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.508638
Match:	PF08655.1
Description:	No description for PF08655.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.852	0.097	meiotic chromosome segregation	a.27.1	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases

Predicted Domain #2

Region A:
Residues: [76-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPVESNPSDQ DVMSNSTEAD LQLHTKNEHL EKRHSFVGKS DFPDAAVQGD NTKNEDFVQS  60
   61 TPKKMDVSLE DISLDDAALT PIPARMQTPL RKPENNPHTG RSALLHRVLD TNWQVQVTPR 120
  121 EPKNLQSQEV MDIDSSPFVS PSPISMKMDM PSLNDRNSSH ALSLFAEFEH ESYDSINPSG 180
  181 MSPPKTIQFS PHTMGVGSSQ QANERSLSLQ RKLETLNDSN DSFVKEEDSW EL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits