YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC839.03c
Organism:	Schizosaccharomyces pombe
Length:	251 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC839.03c.

Description	E-value	Query Range	Subject Range
gi\|94369355 - gi\|94369355\|ref\|XP_992109.1\| PREDICTED: similar to RP42 homolog [Mus musculus]	387.0	[0..1]	[244..158]
gi\|109121360 - gi\|109121360\|ref\|XP_001105171.1\| PREDICTED: similar to DCN1-like protein 2 (Defective in cullin nedd...	387.0	[0..1]	[242..172]
gi\|114590611 - gi\|114590611\|ref\|XP_516896.2\| PREDICTED: similar to DCN1, defective in cullin neddylation 1, domain ...	384.0	[0..1]	[244..135]
gi\|50730510 - gi\|50730510\|ref\|XP_416939.1\| PREDICTED: similar to RP42 homolog; squamous cell carcinoma-related onc...	371.0	[0..1]	[242..56]
gi\|68432257 - gi\|68432257\|ref\|XP_683837.1\| PREDICTED: similar to rp42 homolog isoform 1 [Danio rerio]	370.0	[0..1]	[242..14]
gi\|76670639 - gi\|76670639\|ref\|XP_589968.2\| PREDICTED: similar to DCN1, defective in cullin neddylation 1, domain c...	365.0	[0..1]	[244..38]

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Predicted Domain #1

Region A:
Residues: [1-251]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPDTVSLTR AFSKATSTSS KAALSWLKKY NFDYDVAYTK WIQQKSREEA EKQLNNVFSQ  60
   61 FSSKEDKDLI ELDGSVQLFT ALDISLEDPE TLLVSYFLKS PRMGEFHRES FVEGALNLST 120
  121 TSLDQLKLAI KEKVQVWRSD ASLQKAIYIY TYPLACDKGK KTLSTSIAIE FFQILLKDTF 180
  181 PLLDDWIAFL KVSPIIEKSL PKDTWNELWD FSVFVKSDPN CSNYDFEGAW PTLIDEFVSY 240
  241 YREHGYKNSS S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	2is9A
Description:	No description for 2is9A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits