YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC947.10
Organism:	Schizosaccharomyces pombe
Length:	676 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC947.10.

Description	E-value	Query Range	Subject Range
gi\|41581287 - gi\|41581287\|emb\|CAE47936.1\| possible RING finger protein [Aspergillus fumigatus] gi\|159131331 - gi\|159131331\|gb\|EDP56444.1\| RING finger ubiquitin ligase (Tul1), putative [Aspergillus fumigatus A11... gi\|66850211, gi\|... - gi\|70995642\|ref\|XP_752576.1\| RING finger ubiquitin ligase (Tul1) [Aspergillus fumigatus Af293], gi\|6...	480.0	[0..27]	[676..67]
gi\|40747037, gi\|... - gi\|67517789\|ref\|XP_658679.1\| hypothetical protein AN1075.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	479.0	[0..27]	[676..67]
gi\|46125601, gi\|... - gi\|46125601\|ref\|XP_387354.1\| hypothetical protein FG07178.1 [Gibberella zeae PH-1], gi\|42553425\|gb\|E...	462.0	[0..3]	[676..60]
TUL1_YEAST - Transmembrane E3 ubiquitin-protein ligase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... TUL1 - Golgi-localized RING-finger ubiquitin ligase (E3), involved in ubiquitinating and sorting membrane p...	442.0	[0..54]	[676..156]
gi\|83766727 - gi\|83766727\|dbj\|BAE56867.1\| unnamed protein product [Aspergillus oryzae] gi\|169768798 - gi\|169768798\|ref\|XP_001818869.1\| hypothetical protein [Aspergillus oryzae RIB40]	437.0	[0..27]	[676..67]
gi\|63147406, gi\|... - gi\|63147406\|gb\|AAY34176.1\| At2g20650 [Arabidopsis thaliana], gi\|42570835\|ref\|NP_973491.1\| zinc finge...	413.0	[0..43]	[675..34]
gi\|38111649, gi\|... - gi\|39946090\|ref\|XP_362582.1\| hypothetical protein MG08165.4 [Magnaporthe grisea 70-15], gb\|EAA57196....	411.0	[0..5]	[676..71]
gi\|115491729, gi... - gi\|115491729\|ref\|XP_001210492.1\| hypothetical protein ATEG_00406 [Aspergillus terreus NIH2624], gi\|1...	397.0	[0..27]	[676..67]
gi\|44984822, gi\|... - gi\|45198793\|ref\|NP_985822.1\| AFR275Wp [Ashbya gossypii ATCC 10895], gi\|44984822\|gb\|AAS53646.1\| AFR27... gi\|44984822 - gi\|44984822\|gb\|AAS53646.1\| AFR275Wp [Ashbya gossypii ATCC 10895]	388.0	[0..102]	[676..206]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFAPAPRLP SRNGESSEKS IKAEKRAFSE IKNATFLNIP ERVEHSLTFP TEIWETRDGL  60
   61 FEEPVGKGDS HLNHTSVMTG NWNILPYPSF GKVSPNVTWH TTLRNIVMSQ SGRFSANLYE 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [121-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YVDGNSDGIS FVLNLENNND TSVYHMTFHG DRVKPINVFL GSTDVTPNFG GVDVIPWLLK  60
   61 DSPYKDAPPL DGTEYFPLLQ NRSLERIETR LQDAQTVGWS PLVFEEEEVT CSAFVFLHNK 120
  121 NTGLDKETLK AIENEFYHPQ GVSTQKMPEV FVSGLVYSPD CNVAFTFSNT KGPRNFVLEN 180
  181 HLVRFSSLYI FIVLSQIFVL LRQMRINSPS H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [332-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VQRLSFLTIA MQAGLDAYIA IFFLSTNAVI EKGYLPFVSV AFLSLVPSVM FTMRYLALIL  60
   61 RVQNSNMPPP APRPVTNNSS NNNTNQSNAS N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [423-676]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENSPNAPSAA NDNTETTTVN PPQEDDQPMT QHERDQRDWS AVCLRFYFII LVVCIASLYS  60
   61 AFWPVIYRFY FISALIFTSY SFWIPQIIQN VKQGTSRSFT WTYILGASVL RLYLPLAIFI 120
  121 DSELILGFPP KYFFALGLVL WMLFQVLVLL VQDTLGPRFF LPKKFFLSSP VYDYHPVIQQ 180
  181 DDLEAFMRDA NVCPICMQPI ELVSTGSTLN PASMMVRRNY MLTPCHHLYH RQCLLQWMET 240
  241 RSICPVCRCH LPAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.39794
Match:	1fbvA
Description:	Cbl; N-terminal domain of cbl (N-cbl); CBL
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits