YRC Public Data Repository - Protein Structure Prediction

Protein:	ugo1
Organism:	Schizosaccharomyces pombe
Length:	421 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ugo1.

Description	E-value	Query Range	Subject Range
gi\|12833101 - gi\|12833101\|dbj\|BAB22390.1\| unnamed protein product [Mus musculus]	292.0	[0..1]	[421..187]
gi\|61098440, gi\|... - gi\|61098440\|ref\|NP_001012967.1\| solute carrier family 25, member 13 [Gallus gallus], gi\|53136145\|emb...	292.0	[0..1]	[421..186]
gi\|62897287 - gi\|62897287\|dbj\|BAD96584.1\| solute carrier family 25, member 13 (citrin) variant [Homo sapiens]	290.0	[0..1]	[421..187]
gi\|109473096, gi... - gi\|62646841\|ref\|XP_342641.2\| PREDICTED: similar to Calcium-binding mitochondrial carrier protein Ara...	290.0	[0..1]	[421..187]
gi\|147901189, gi... - gi\|37748220\|gb\|AAH59349.1\| MGC69168 protein [Xenopus laevis], gi\|147901189\|ref\|NP_001083224.1\| hypot...	289.0	[0..1]	[421..186]
gi\|119597154, gi... - gi\|237649019\|ref\|NP_001153682.1\| solute carrier family 25, member 13 isoform 1 [Homo sapiens], gi\|22... gi\|114614638 - gi\|114614638\|ref\|XP_527824.2\| PREDICTED: solute carrier family 25, member 13 (citrin) isoform 3 [Pan...	289.0	[0..1]	[421..187]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPYRPYVVV NNVEPTFSIT PEPTFETQPT ISKSEIFETL RSILVTKYLT TFFVQPLEVA  60
   61 KTVCQVEEYL PKRTKIERDG KQTKEPYDED IPDGTEQEGL SDDEHEIYAY FETPTTEK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [119-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVTEQLAEKL CVDASGYVTD PSNLIERSYT IHSKRFSIKS IISELWEKEG ARGLWKGHTI  60
   61 SFLHNLLYSG LQSWLSATLS GALAIADPNI ISPIDSVRPL LSLFIKSITS AISALILSPL 120
  121 DIARTKIILF PISSSSYLSS ASETSGNSHK KFKPLTIRQC LKALPFYCPS SLILPTVCYV 180
  181 SLPPFVSSVL PLTFRNFLGS SPTLDAMVGL GTSAVQFLLK CPLEMVLRRA QAQYECNLPP 240
  241 QTIVPVGKYT GIVGTIWCLL SEEDPGKFGI EGLYRGWRVG IWGMSSTLAL NYISSNLREE 300
  301 VEF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits