YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1539.10
Organism:	Schizosaccharomyces pombe
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1539.10.

Description	E-value	Query Range	Subject Range
NOP16_ASHGO - Nucleolar protein 16 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) G... NOP16_ASHGO - Nucleolar protein 16 OS=Ashbya gossypii GN=NOP16 PE=3 SV=1	228.0	[0..1]	[205..1]
gi\|39972295, gi\|... - gi\|39972295\|ref\|XP_367538.1\| hypothetical protein MG07449.4 [Magnaporthe grisea 70-15], gb\|EAA53172....	218.0	[0..1]	[206..1]
NOP16_EMENI - Nucleolar protein 16 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M... NOP16_EMENI - Nucleolar protein 16 OS=Emericella nidulans GN=nop16 PE=3 SV=1	212.0	[0..1]	[208..1]
NOP16_NEUCR - Nucleolar protein 16 OS=Neurospora crassa GN=nop-16 PE=3 SV=1 NOP16_NEUCR - Nucleolar protein 16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / ...	209.0	[0..1]	[204..1]
NOP16_YEAST - Nucleolar protein 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP16 PE=1 SV=1 NOP16 - Constituent of 66S pre-ribosomal particles, involved in 60S ribosomal subunit biogenesis	208.0	[0..1]	[206..1]
NOP16_CANGA - Nucleolar protein 16 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y... NOP16_CANGA - Nucleolar protein 16 OS=Candida glabrata GN=NOP16 PE=3 SV=1	204.0	[0..1]	[207..1]
gi\|46121491, gi\|... - gi\|46121491\|ref\|XP_385300.1\| hypothetical protein FG05124.1 [Gibberella zeae PH-1], gi\|42550919\|gb\|E...	204.0	[0..1]	[206..1]
NOP16_CANAL - Nucleolar protein 16 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NOP16 PE=3 SV=1 NOP16_CANAL - Nucleolar protein 16 OS=Candida albicans GN=NOP16 PE=3 SV=1	199.0	[0..1]	[206..1]
NOP16_DEBHA - Nucleolar protein 16 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / ... NOP16_DEBHA - Nucleolar protein 16 OS=Debaryomyces hansenii GN=NOP16 PE=3 SV=1	193.0	[0..1]	[206..1]
NOP16_KLULA - Nucleolar protein 16 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / ... NOP16_KLULA - Nucleolar protein 16 OS=Kluyveromyces lactis GN=NOP16 PE=3 SV=1	185.0	[0..1]	[206..1]

Back

Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPRQRNKQ RSGKPRLTRR NANKKAKAKI YGNFVIQQNW DKHATLRQNY ARLGLLATPN  60
   61 YVTGGVEKLY P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [72-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKRENEDRE LTSEELDELK KSLPPGQAIV RRDDDGNIIE IIHGEAKTLD DVLDKEISIA  60
   61 PAKTEVVRQL EEEAVKKAAR QSNKMLPLSA FEHAYIQRLI NKYGTEDFES MAKDVKLNSK 120
  121 LFNGSKLKNL YIRMKATK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits