YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC550.09
Organism:	Schizosaccharomyces pombe
Length:	535 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC550.09.

Description	E-value	Query Range	Subject Range
gi\|46127955, gi\|... - gi\|46127955\|ref\|XP_388531.1\| hypothetical protein FG08355.1 [Gibberella zeae PH-1], gi\|42549300\|gb\|E...	368.0	[0..133]	[534..685]
gi\|51830474 - gi\|51830474\|gb\|AAU09766.1\| YLR324W [Saccharomyces cerevisiae]	293.0	[0..197]	[526..126]
gi\|44985093, gi\|... - gi\|45199018\|ref\|NP_986047.1\| AFR500Wp [Ashbya gossypii ATCC 10895], gi\|44985093\|gb\|AAS53871.1\| AFR50... gi\|44985093 - gi\|44985093\|gb\|AAS53871.1\| AFR500Wp [Ashbya gossypii ATCC 10895]	292.0	[0..197]	[524..118]
gi\|85097883 - gi\|85097883\|ref\|XP_960526.1\| hypothetical protein NCU05564 [Neurospora crassa OR74A] gi\|28922019, gi\|... - gi\|32409877\|ref\|XP_325419.1\| hypothetical protein [Neurospora crassa], gi\|28922019\|gb\|EAA31290.1\| hy...	266.0	[0..133]	[519..358]
gi\|49096738, gi\|... - gi\|67539044\|ref\|XP_663296.1\| hypothetical protein AN5692.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	266.0	[0..176]	[522..29]
gi\|50551763, gi\|... - gi\|50551763\|ref\|XP_503356.1\| YALI0D27302p [Yarrowia lipolytica], gi\|49649224\|emb\|CAG81562.1\| unnamed... gi\|49649224 - gi\|49649224\|emb\|CAG81562.1\| YALI0D27302p [Yarrowia lipolytica]	263.0	[0..200]	[524..96]
gi\|6651288 - gi\|6651288\|gb\|AAF22254.1\|AF160511_1 integral peroxisomal membrane protein [Yarrowia lipolytica]	263.0	[0..200]	[524..96]

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Predicted Domain #1

Region A:
Residues: [1-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRAHLFSEP DNSKLWAKST GSDAFDLILK VLLWTAPWYY CLTTLFFTWL IILYPRPTLA  60
   61 CSVAAWLFWF TSLDTLEPDD RKNTLKASEA VSTSAKTSEE TAKPSETRED GEWNTLKNTL 120
  121 EADAQNLMSG FQMLQRRWSQ PKTTTLKTEV KEQQASQSPS VEGENEPAGV KSNEATKPSV 180
  181 TEEKEKNAEQ NKRRERLSIS HIVTELAKKD EVSSESGSNE IVNAKLKNEQ LDSNFTLLDA 240
  241 YLEPLVHLHE YSRRSNTLFF FYLPIVMSIL IFCLPTQALF IVLSSVFLAW HSPPLQAVLF 300
  301 CIRRISFFNL LYEKFVIGKT KEPAKPVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [329-535]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPSSNEPPAP SAENKQPSVS SPEKKESPAT HLLKVIGSSP YVVHSNHTNN TLTDKESSDP  60
   61 TEKCLYLIEH QRYWVGVGWL NRTLPTDPPN FTNAGSTDPV AEPTAQLLPP DGLAWIDDKW 120
  121 SISPWTFTDT FWAQPAKTQF RTAFTRSREW RRRYRVAPPA ENEKPHTSRT NTASSLSSTS 180
  181 EDQVSTHGSI SSAKVTAIPD SNGAEAL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits